JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SREBF2_chr22_41828105_41912305	0/0	a0007	1141	1	0	0	1	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	a0008	1141	1	1	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	a0009	1141	1	0	0	0	0	1	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	a0010	1141	1	0	0	1	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREK1IP1_chr5_64713148_64773691	1/1	a0001	155	339	87	57	152	11	30	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	a0002	155	2	0	1	0	1	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	a0003	155	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1_chr5_66139300_66188615	1/1	a0001	624	380	92	68	168	10	40	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	a0002	624	3	0	0	3	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	a0003	624	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	a0004	624	1	0	0	1	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	a0005	624	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SRFBP1_chr5_121956975_122033633	1/1	a0001	429	182	64	36	55	5	20	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	a0002	429	27	5	5	15	1	1	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	a0003	429	4	4	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	a0004	429	4	4	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	a0005	429	3	3	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	a0006	429	3	3	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	a0007	429	2	1	1	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	a0008	429	1	1	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	a0009	429	1	0	0	0	0	1	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	a0010	429	1	1	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRF_chr6_43166269_43186506	1/1	a0001	508	355	96	58	153	12	34	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	a0002	508	1	0	0	1	0	0	copy fasta	SRF	chr6	43166269	43186506
SRGAP1_chr12_63839700_64167217	1/1	a0001	1085	158	69	21	40	5	21	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	a0002	1085	6	0	0	0	1	5	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	a0003	1085	5	5	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	a0004	1085	1	0	1	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP2B_chr1_144882288_145100328	1/1	a0001	459	44	2	15	15	4	6	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	a0002	459	4	0	0	4	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	a0003	459	2	0	0	0	0	2	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	a0004	459	1	0	0	0	0	1	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	a0005	459	1	0	0	0	0	1	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	a0006	459	1	0	1	0	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	a0007	459	1	1	0	0	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	a0008	459	1	1	0	0	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	a0009	459	1	0	0	1	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2C_chr1_121179975_121397874	0/0	a0001	459	164	59	29	48	9	19	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	1/1	a0002	459	101	18	22	34	5	20	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	a0003	459	3	3	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	a0004	459	1	0	0	1	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	a0005	459	1	0	0	0	0	1	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	a0006	459	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	a0007	459	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	a0008	459	1	0	1	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	a0009	459	1	0	0	1	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2_chr1_206198541_206469436	1/1	a0001	1071	178	71	39	43	4	19	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	a0002	1071	1	0	0	1	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	a0003	1071	1	0	1	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	a0004	1071	1	0	0	0	0	1	copy fasta	SRGAP2	chr1	206198541	206469436