JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SRGAP2_chr1_206198541_206469436	0/0	a0005	1071	1	1	0	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP3_chr3_8975591_9254646	1/1	a0001	1099	218	70	39	77	12	18	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	a0002	1099	3	3	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	a0003	1099	2	0	0	2	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	a0004	1099	1	0	0	1	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	a0005	1099	1	0	0	1	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	a0006	1099	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	a0007	1099	1	0	0	1	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	a0008	1099	1	0	1	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGN_chr10_69083103_69109805	0/1	a0001	158	229	34	45	102	15	32	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	1/0	a0002	158	177	57	21	84	2	12	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	a0003	158	1	1	0	0	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	a0004	158	1	1	0	0	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	a0005	158	1	0	0	0	1	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	a0006	158	1	1	0	0	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRI_chr7_88200115_88225038	1/1	a0001	198	400	87	72	181	16	42	copy fasta	SRI	chr7	88200115	88225038
SRI_chr7_88200115_88225038	0/0	a0002	198	1	0	0	1	0	0	copy fasta	SRI	chr7	88200115	88225038
SRI_chr7_88200115_88225038	0/0	a0003	198	1	1	0	0	0	0	copy fasta	SRI	chr7	88200115	88225038
SRL_chr16_4184374_4247080	1/1	a0001	473	353	93	74	133	16	35	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	a0002	473	3	3	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	a0003	473	1	0	0	1	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	a0004	473	1	0	0	0	0	1	copy fasta	SRL	chr16	4184374	4247080
SRMS_chr20_63533489_63552749	1/1	a0001	488	243	4	65	121	18	33	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0002	488	29	27	1	1	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0003	488	28	25	3	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0004	488	14	0	0	0	0	14	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0005	488	9	9	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0006	488	7	5	1	1	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0007	488	4	4	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0008	488	3	3	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0009	488	2	0	0	2	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0010	488	2	1	1	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0011	488	2	2	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0012	488	2	2	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0013	488	1	0	0	1	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0014	488	1	0	0	1	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0015	488	1	0	0	0	0	1	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0016	488	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0017	488	1	0	0	1	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0018	488	1	0	1	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0019	488	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0020	488	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0021	488	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0022	488	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	a0023	488	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRM_chr1_11049589_11065018	1/1	a0001	302	345	94	66	129	8	46	copy fasta	SRM	chr1	11049589	11065018
SRM_chr1_11049589_11065018	0/0	a0002	302	1	0	0	1	0	0	copy fasta	SRM	chr1	11049589	11065018
SRP14_chr15_40030690_40044181	0/1	a0001	136	351	83	59	160	15	33	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	1/0	a0002	136	70	13	5	46	1	4	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	a0003	136	1	0	0	1	0	0	copy fasta	SRP14	chr15	40030690	40044181