JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SRPK3_chrX_153776041_153790730	0/0	a0016	564	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPRA_chr11_126257938_126273895	1/1	a0001	638	392	90	69	175	16	40	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	a0002	638	1	1	0	0	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	a0003	638	1	0	0	1	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	a0004	638	1	0	1	0	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	a0005	638	1	1	0	0	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRB_chr3_133800815_133826492	1/1	a0001	271	335	80	54	142	17	40	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	a0002	271	95	9	25	51	1	9	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	a0003	271	7	0	0	7	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	a0004	271	7	6	1	0	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	a0005	271	1	1	0	0	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	a0006	271	1	0	0	0	0	1	copy fasta	SRPRB	chr3	133800815	133826492
SRPX2_chrX_100639199_100680788	1/1	a0001	465	315	79	57	134	11	32	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	a0002	465	1	1	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	a0003	465	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	a0004	190	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX_chrX_38144339_38225871	1/0	a0001	464	192	25	33	97	8	28	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	a0002	463	34	16	11	0	2	5	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	a0003	464	19	19	0	0	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/1	a0004	464	6	1	3	0	1	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	a0005	464	1	0	1	0	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	a0006	464	1	1	0	0	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	a0007	464	1	0	0	0	0	1	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	a0008	464	1	0	1	0	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	a0009	463	1	1	0	0	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	a0010	463	1	1	0	0	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRRD_chr22_26478877_26499658	0/1	a0001	332	338	59	54	172	15	37	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	1/0	a0002	339	64	31	11	18	0	3	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	a0003	332	37	1	6	27	1	2	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	a0004	339	5	0	5	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	a0005	75	1	0	0	1	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	a0006	332	1	1	0	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	a0007	332	1	1	0	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	a0008	346	1	1	0	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRM1_chr1_24638302_24678281	1/1	a0001	904	348	96	68	131	13	38	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	a0002	904	1	0	0	1	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	a0003	904	1	0	0	0	1	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	a0004	904	1	0	1	0	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	a0005	904	1	0	1	0	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM2_chr16_2747638_2776412	1/0	a0001	2752	210	64	17	112	6	10	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/1	a0002	2752	116	0	41	46	10	18	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0003	2752	8	8	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0004	2752	4	2	2	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0005	2752	3	0	0	0	0	3	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0006	2752	3	0	0	3	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0007	2752	2	2	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0008	2752	2	0	0	2	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0009	2752	2	0	1	0	1	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0010	2752	2	0	0	2	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0011	2752	2	0	0	2	0	0	copy fasta	SRRM2	chr16	2747638	2776412