JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SUCLA2_chr13_47937656_48006273	0/1	a0001	463	205	37	41	88	10	28	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	1/0	a0002	463	110	33	19	35	6	16	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	a0003	463	27	0	10	17	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	a0004	463	9	9	0	0	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	a0005	463	3	3	0	0	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	a0006	463	2	2	0	0	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	a0007	463	2	2	0	0	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLG1_chr2_84418528_84464280	1/1	a0001	346	263	92	62	57	16	34	copy fasta	SUCLG1	chr2	84418528	84464280
SUCLG1_chr2_84418528_84464280	0/0	a0002	346	1	0	0	1	0	0	copy fasta	SUCLG1	chr2	84418528	84464280
SUCLG2_chr3_67369719_67659612	1/1	a0001	432	237	56	36	116	4	23	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	a0002	432	17	17	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	a0003	432	12	5	2	4	0	1	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	a0004	432	3	3	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	a0005	432	2	2	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	a0006	432	2	2	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	a0007	432	1	0	0	1	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	a0008	432	1	0	0	1	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	a0009	432	1	0	0	1	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	a0010	432	1	1	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	a0011	432	1	0	0	1	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	a0012	432	1	1	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	a0013	432	1	1	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCNR1_chr3_151868643_151889619	1/1	a0001	334	456	92	86	224	16	36	copy fasta	SUCNR1	chr3	151868643	151889619
SUCO_chr1_172528150_172616833	1/1	a0001	1254	323	80	62	139	12	28	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	a0002	1254	5	5	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	a0003	1254	4	2	0	0	0	2	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	a0004	1254	1	0	0	1	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	a0005	1254	1	1	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	a0006	1254	1	0	0	1	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	a0007	1254	1	1	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	a0008	1254	1	1	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	a0009	1254	1	1	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	a0010	1254	1	1	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	a0011	1254	1	0	0	1	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUDS3_chr12_118371555_118423033	1/1	a0001	328	408	92	66	194	18	36	copy fasta	SUDS3	chr12	118371555	118423033
SUFU_chr10_102498972_102638535	1/1	a0001	484	268	60	56	106	8	36	copy fasta	SUFU	chr10	102498972	102638535
SUGCT_chr7_40130005_40865763	0/0	a0001	438	8	2	6	0	0	0	copy fasta	SUGCT	chr7	40130005	40865763
SUGP1_chr19_19271033_19325509	1/1	a0001	645	305	94	52	111	14	32	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	a0002	645	21	0	10	0	2	9	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	a0003	645	3	0	3	0	0	0	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	a0004	645	1	0	1	0	0	0	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	a0005	645	1	0	0	0	0	1	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	a0006	645	1	0	0	1	0	0	copy fasta	SUGP1	chr19	19271033	19325509
SUGP2_chr19_18985893_19038517	0/1	a0001	1082	195	41	44	78	7	24	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	1/0	a0002	1082	75	19	14	25	3	13	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	a0003	1082	9	9	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	a0004	1082	7	5	2	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	a0005	1082	4	4	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	a0006	1082	4	4	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	a0007	1082	3	0	0	3	0	0	copy fasta	SUGP2	chr19	18985893	19038517