JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SUGP2_chr19_18985893_19038517	0/0	a0008	1082	1	0	0	0	0	1	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	a0009	1082	1	1	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	a0010	1082	1	1	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	a0011	1082	1	1	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	a0012	1082	1	1	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGT1_chr13_52647836_52705909	1/1	a0001	333	308	84	68	108	14	32	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	a0002	333	1	0	0	0	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	a0003	333	1	0	0	0	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SULF1_chr8_69487847_69665912	1/1	a0001	871	274	71	58	98	14	31	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	a0002	871	12	12	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	a0003	871	5	5	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	a0004	870	3	0	0	3	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	a0005	871	1	0	0	1	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	a0006	871	1	0	0	0	0	1	copy fasta	SULF1	chr8	69487847	69665912
SULF2_chr20_47652406_47790481	1/1	a0001	870	336	83	50	151	9	41	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	a0002	870	16	0	10	0	1	5	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	a0003	870	4	3	1	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	a0004	870	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	a0005	870	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	a0006	870	1	0	0	0	0	1	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	a0007	870	1	0	0	0	0	1	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	a0008	870	1	1	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	a0009	870	1	1	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	a0010	870	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	a0011	870	1	0	1	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULT1A1_chr16_28600258_28615044	0/0	a0000	0	2	0	0	1	0	1	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	a0001	295	292	30	42	171	8	41	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/1	a0002	295	94	28	38	18	5	4	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	1/0	a0003	295	32	29	1	1	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	a0004	295	3	2	1	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	a0005	295	2	2	0	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	a0006	295	1	0	0	1	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	a0007	295	1	1	0	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	a0008	295	1	0	0	1	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	a0009	295	1	0	0	0	1	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	a0010	295	1	1	0	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	a0011	295	1	0	0	1	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	a0012	295	1	1	0	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A2_chr16_28586943_28602050	0/0	a0001	295	265	52	31	140	5	37	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/1	a0002	295	103	22	42	28	5	5	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	a0003	295	16	2	6	1	3	4	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	1/0	a0004	295	8	7	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	a0005	295	6	0	0	6	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	a0006	148	5	5	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	a0007	295	4	1	0	1	1	1	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	a0008	216	2	0	0	2	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	a0009	295	2	2	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	a0010	295	1	1	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	a0011	295	1	0	0	0	0	1	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	a0012	295	1	0	1	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050