JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BBS4_chr15_72681207_72743473	0/0	a0007	519	1	0	0	1	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	a0008	358	1	0	0	1	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	a0009	519	1	0	0	0	0	1	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	a0010	519	1	0	1	0	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS5_chr2_169474494_169511655	1/1	a0001	341	394	95	54	185	14	44	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	a0002	341	2	0	2	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	a0003	341	1	0	0	1	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	a0004	341	1	1	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS7_chr4_121819329_121875474	1/1	a0001	715	372	88	67	162	14	39	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	a0002	715	1	0	0	0	0	1	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	a0003	715	1	0	1	0	0	0	copy fasta	BBS7	chr4	121819329	121875474
BBS9_chr7_33124564_33611069	1/1	a0001	887	189	51	30	70	9	27	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	a0002	887	46	15	6	15	1	9	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	a0003	887	6	0	0	6	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	a0004	887	6	6	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	a0005	887	4	4	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	a0006	887	4	3	1	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	a0007	887	3	0	0	3	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	a0008	887	2	0	1	1	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	a0009	887	2	2	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	a0010	887	1	0	1	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	a0011	887	1	0	0	1	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	a0012	887	1	1	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	a0013	887	1	0	1	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	a0014	887	1	0	0	0	0	1	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	a0015	887	1	0	0	0	0	1	copy fasta	BBS9	chr7	33124564	33611069
BBX_chr3_107517962_107816339	1/1	a0001	941	200	64	52	46	8	28	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	a0002	940	9	1	5	0	2	1	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	a0003	941	7	7	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	a0004	941	2	2	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	a0005	941	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	a0006	941	1	0	0	0	0	1	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	a0007	941	1	0	1	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	a0008	941	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BCAM_chr19_44804103_44826421	1/1	a0001	628	296	50	54	150	9	31	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	a0002	628	90	34	20	16	8	12	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	a0003	628	5	5	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	a0004	628	3	0	0	3	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	a0005	628	3	0	3	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	a0006	628	2	0	0	2	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	a0007	628	2	2	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	a0008	628	1	0	0	0	0	1	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	a0009	628	1	0	0	0	1	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	a0010	628	1	1	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	a0011	628	1	1	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	a0012	628	1	0	1	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	a0013	628	1	0	0	0	0	1	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	a0014	628	1	0	0	0	0	1	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	a0015	628	1	0	0	1	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	a0016	628	1	1	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421