JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SVIL_chr10_29452338_29639971	0/0	a0045	2214	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0046	2214	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0047	2214	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0048	2214	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0049	2214	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0050	2214	1	0	0	0	1	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0051	2214	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIP_chr11_22813927_22834801	1/1	a0001	77	430	92	74	198	16	48	copy fasta	SVIP	chr11	22813927	22834801
SVOPL_chr7_138589285_138706362	1/0	a0001	492	197	61	18	84	4	29	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/1	a0002	492	105	25	30	24	14	11	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	a0003	492	35	1	0	32	0	2	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	a0004	492	10	2	1	7	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	a0005	492	3	0	0	3	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	a0006	491	2	0	0	2	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	a0007	492	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	a0008	491	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	a0009	492	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	a0010	492	1	1	0	0	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	a0011	492	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	a0012	492	1	1	0	0	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	a0013	492	1	1	0	0	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	a0014	492	1	0	1	0	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOP_chr12_108902741_109026068	1/1	a0001	548	288	88	58	98	8	34	copy fasta	SVOP	chr12	108902741	109026068
SWAP70_chr11_9659077_9757993	1/0	a0001	585	155	33	24	84	2	11	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/1	a0002	585	138	45	28	37	10	17	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	a0003	585	1	0	0	1	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWI5_chr9_128271276_128293989	1/1	a0001	14	386	88	56	186	14	40	copy fasta	SWI5	chr9	128271276	128293989
SWSAP1_chr19_11369666_11381169	1/1	a0001	250	389	86	71	170	16	44	copy fasta	SWSAP1	chr19	11369666	11381169
SWSAP1_chr19_11369666_11381169	0/0	a0002	250	9	8	1	0	0	0	copy fasta	SWSAP1	chr19	11369666	11381169
SWSAP1_chr19_11369666_11381169	0/0	a0003	250	4	4	0	0	0	0	copy fasta	SWSAP1	chr19	11369666	11381169
SWT1_chr1_185152167_185296781	1/1	a0001	900	122	11	28	65	6	10	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	a0002	900	72	16	19	25	4	8	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	a0003	900	68	42	7	17	1	1	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	a0004	900	27	7	10	5	1	4	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	a0005	900	10	0	0	10	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	a0006	900	9	6	0	3	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	a0007	900	5	5	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	a0008	900	3	3	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	a0009	900	2	0	2	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	a0010	900	2	0	0	2	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	a0011	900	1	1	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	a0012	900	1	0	1	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	a0013	900	1	0	0	0	0	1	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	a0014	900	1	0	0	1	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	a0015	900	1	1	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	a0016	900	1	0	1	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SYAP1_chrX_16714612_16770340	1/1	a0001	352	286	72	54	121	11	26	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	a0002	352	2	0	0	2	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	a0003	128	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	a0004	62	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340