JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BCAR3_chr1_93556741_93686837	0/0	a0013	825	1	0	1	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	a0014	825	1	0	0	1	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	a0015	825	1	1	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAS1_chr20_53938541_54075594	0/0	a0001	629	101	31	19	39	4	8	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	1/0	a0002	629	67	8	17	28	4	9	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0003	629	41	3	4	28	1	5	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0004	629	28	2	2	20	1	3	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0005	629	25	0	1	24	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0006	629	21	5	1	9	2	4	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0007	629	13	13	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0008	629	8	6	2	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0009	629	6	0	0	6	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0010	629	5	4	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0011	629	5	4	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0012	629	4	1	2	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0013	629	4	1	2	0	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0014	629	4	0	1	0	0	3	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0015	629	3	0	0	2	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/1	a0016	629	3	1	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0017	629	2	1	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0018	629	2	0	0	2	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0019	629	2	2	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0020	629	2	0	0	2	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0021	629	2	0	2	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0022	629	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0023	629	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0024	629	1	0	0	0	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0025	629	1	0	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0026	629	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0027	629	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0028	629	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0029	629	1	0	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0030	629	1	0	0	0	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0031	629	1	0	0	0	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0032	629	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0033	629	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0034	629	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0035	629	1	0	0	0	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0036	629	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	a0037	629	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS2_chr1_114562557_114586615	1/1	a0001	225	413	94	78	177	16	46	copy fasta	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	a0002	225	1	0	0	1	0	0	copy fasta	BCAS2	chr1	114562557	114586615
BCAS3_chr17_60672851_61397831	0/0	a0001	913	30	28	2	0	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	a0002	913	23	21	1	1	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	a0003	913	20	12	5	3	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	a0004	913	1	1	0	0	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS4_chr20_50790061_50882177	1/1	a0001	173	211	72	53	62	5	17	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	a0002	173	51	8	8	21	1	13	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	a0003	173	5	4	1	0	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	a0004	173	1	0	0	1	0	0	copy fasta	BCAS4	chr20	50790061	50882177