JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SYT2_chr1_202585596_202715454	1/1	a0001	419	275	78	56	96	15	28	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	a0002	419	1	0	0	0	1	0	copy fasta	SYT2	chr1	202585596	202715454
SYT3_chr19_50616977_50644881	1/1	a0001	590	381	92	78	145	16	48	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	a0002	590	6	6	0	0	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	a0003	590	1	0	0	1	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT4_chr18_43262892_43282490	1/1	a0001	425	433	85	69	221	12	44	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	a0002	425	8	8	0	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	a0003	425	2	0	2	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	a0004	425	1	0	1	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	a0005	425	1	0	0	1	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	a0006	425	1	1	0	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT5_chr19_55166196_55185289	1/1	a0001	386	387	76	72	179	11	47	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	a0002	386	13	10	2	1	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	a0003	386	3	3	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	a0004	386	2	0	0	2	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	a0005	386	2	2	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	a0006	386	1	1	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	a0007	386	1	0	0	0	0	1	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	a0008	386	1	0	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT6_chr1_114084292_114158869	1/1	a0001	510	357	78	56	177	7	37	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	a0002	510	65	20	18	17	3	7	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	a0003	510	2	0	0	1	0	1	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	a0004	510	1	0	0	1	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	a0005	510	1	0	0	0	0	1	copy fasta	SYT6	chr1	114084292	114158869
SYT7_chr11_61508714_61586076	1/1	a0001	686	186	84	30	46	5	19	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	a0002	686	2	2	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	a0003	686	1	0	0	0	0	1	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	a0004	686	1	0	0	0	1	0	copy fasta	SYT7	chr11	61508714	61586076
SYT8_chr11_1829990_1842521	0/0	a0001	387	126	11	30	60	7	18	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0002	387	102	1	21	71	1	8	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0003	387	100	24	16	45	6	9	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0004	387	39	34	3	0	1	1	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0005	387	37	5	8	15	1	8	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0006	387	15	9	4	0	0	2	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	1/0	a0007	387	7	5	1	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0008	387	6	0	0	6	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0009	387	3	0	0	3	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0010	387	3	3	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0011	387	3	2	0	1	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0012	387	2	2	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0013	387	1	0	0	1	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0014	387	1	1	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0015	387	1	0	0	0	0	1	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/1	a0016	387	1	0	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0017	387	1	0	1	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0018	387	1	0	1	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0019	387	1	1	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0020	387	1	1	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0021	387	1	1	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0022	387	1	0	0	1	0	0	copy fasta	SYT8	chr11	1829990	1842521