JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TAAR8_chr6_132547672_132558756	0/0	a0006	342	1	0	0	1	0	0	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	a0007	342	1	0	0	1	0	0	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	a0008	342	1	0	0	0	0	1	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	a0009	342	1	0	0	0	0	1	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	a0010	342	1	0	0	1	0	0	copy fasta	TAAR8	chr6	132547672	132558756
TAAR9_chr6_132533277_132544336	1/1	a0001	348	331	73	56	168	9	23	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	a0002	60	74	17	21	22	2	12	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	a0003	348	12	1	1	7	1	2	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	a0004	348	6	6	0	0	0	0	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	a0005	346	3	0	0	0	0	3	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	a0006	348	1	1	0	0	0	0	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	a0007	195	1	0	0	1	0	0	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	a0008	348	1	0	0	1	0	0	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	a0009	348	1	0	0	1	0	0	copy fasta	TAAR9	chr6	132533277	132544336
TAB1_chr22_39394780_39436882	1/1	a0001	504	293	89	62	82	14	44	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	a0002	504	15	0	0	15	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	a0003	504	2	0	0	2	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	a0004	504	1	1	0	0	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	a0005	504	1	0	0	1	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB2_chr6_149312712_149416607	1/1	a0001	693	366	98	70	150	12	34	copy fasta	TAB2	chr6	149312712	149416607
TAB3_chrX_30822442_30894254	1/1	a0001	712	302	70	59	134	9	28	copy fasta	TAB3	chrX	30822442	30894254
TAC1_chr7_97727086_97745472	1/1	a0001	129	428	94	72	204	14	42	copy fasta	TAC1	chr7	97727086	97745472
TAC3_chr12_57005000_57021529	1/1	a0001	121	334	77	77	128	12	38	copy fasta	TAC3	chr12	57005000	57021529
TAC3_chr12_57005000_57021529	0/0	a0002	121	13	12	1	0	0	0	copy fasta	TAC3	chr12	57005000	57021529
TAC3_chr12_57005000_57021529	0/0	a0003	118	1	1	0	0	0	0	copy fasta	TAC3	chr12	57005000	57021529
TAC4_chr17_49833300_49853069	0/0	a0000	0	2	2	0	0	0	0	copy fasta	TAC4	chr17	49833300	49853069
TAC4_chr17_49833300_49853069	1/1	a0001	107	389	95	71	167	16	38	copy fasta	TAC4	chr17	49833300	49853069
TAC4_chr17_49833300_49853069	0/0	a0002	68	13	0	9	4	0	0	copy fasta	TAC4	chr17	49833300	49853069
TAC4_chr17_49833300_49853069	0/0	a0003	107	1	1	0	0	0	0	copy fasta	TAC4	chr17	49833300	49853069
TAC4_chr17_49833300_49853069	0/0	a0004	107	1	0	0	1	0	0	copy fasta	TAC4	chr17	49833300	49853069
TACC1_chr8_38782236_38858028	1/1	a0001	805	330	77	51	146	15	39	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	a0002	805	7	2	4	0	1	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	a0003	805	4	4	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	a0004	805	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	a0005	805	1	0	0	0	0	1	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	a0006	805	1	0	1	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	a0007	805	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	a0008	805	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC2_chr10_121984163_122259542	0/1	a0001	2948	71	12	8	39	1	10	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0002	2948	37	4	15	11	1	6	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0003	2948	15	0	5	6	0	4	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0004	2948	13	0	0	13	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0005	2948	9	2	3	0	3	1	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0006	2948	8	1	3	3	0	1	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0007	2948	8	1	4	3	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0008	2948	7	6	0	1	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0009	2948	6	6	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0010	2948	6	6	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0011	2948	5	5	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0012	2948	4	0	0	4	0	0	copy fasta	TACC2	chr10	121984163	122259542