JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TACR1_chr2_75041463_75204520	1/1	a0001	407	282	88	42	114	6	30	copy fasta	TACR1	chr2	75041463	75204520
TACR2_chr10_69398903_69421918	0/1	a0001	398	148	31	33	55	11	17	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0002	398	80	0	18	62	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0003	398	54	2	14	22	4	12	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0004	398	45	21	8	2	3	11	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0005	398	17	16	1	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0006	398	13	4	0	7	0	2	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0007	398	6	5	1	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0008	398	4	4	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0009	398	4	4	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0010	398	3	3	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0011	398	1	0	0	1	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0012	398	1	0	0	1	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0013	398	1	0	0	1	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	1/0	a0014	398	1	0	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0015	398	1	0	0	1	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0016	398	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0017	398	1	0	1	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	a0018	398	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR3_chr4_103581031_103724985	1/1	a0001	465	272	91	39	101	9	30	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	a0002	465	3	2	1	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	a0003	465	2	0	0	2	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	a0004	186	1	0	0	1	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	a0005	465	1	0	0	0	1	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	a0006	102	1	1	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACSTD2_chr1_58570433_58582252	1/1	a0001	323	306	31	63	163	15	32	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	a0002	323	64	24	7	31	0	2	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	a0003	323	30	15	9	0	0	6	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	a0004	323	16	9	3	0	0	4	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	a0005	323	7	7	0	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	a0006	323	3	3	0	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	a0007	323	1	0	0	1	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	a0008	323	1	0	0	0	1	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	a0009	323	1	1	0	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	a0010	323	1	0	0	1	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TADA1_chr1_166851510_166881264	1/1	a0001	335	390	96	71	162	16	43	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	a0002	335	27	0	2	24	0	1	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	a0003	335	1	0	1	0	0	0	copy fasta	TADA1	chr1	166851510	166881264
TADA2A_chr17_37401886_37484725	0/0	a0001	443	286	67	60	108	11	40	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/1	a0002	443	61	3	4	48	3	2	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	a0003	443	2	2	0	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	a0004	443	1	0	0	1	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	a0005	443	1	0	0	1	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2B_chr4_7038372_7062952	1/1	a0001	420	417	97	75	180	16	47	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	a0002	420	1	0	1	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	a0003	420	1	0	0	0	0	1	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	a0004	420	1	1	0	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA3_chr3_9774967_9797473	1/1	a0001	432	409	94	70	185	18	40	copy fasta	TADA3	chr3	9774967	9797473
TADA3_chr3_9774967_9797473	0/0	a0002	432	1	0	0	1	0	0	copy fasta	TADA3	chr3	9774967	9797473
TAF10_chr11_6601294_6617216	1/1	a0001	218	440	96	80	202	16	44	copy fasta	TAF10	chr11	6601294	6617216