JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TAFA4_chr3_68726766_68937547	0/0	a0002	140	1	0	0	1	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA5_chr22_48484553_48756932	1/1	a0001	132	258	82	54	82	10	28	copy fasta	TAFA5	chr22	48484553	48756932
TAFAZZIN_chrX_154406539_154426726	1/1	a0001	292	276	67	58	109	11	29	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	a0002	292	4	3	1	0	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	a0003	132	1	0	0	1	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	a0004	132	1	0	0	1	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	a0005	292	1	0	0	0	0	1	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	a0006	182	1	0	0	1	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	a0007	201	1	0	0	1	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAGAP_chr6_159029481_159049991	1/1	a0001	731	369	91	63	165	7	41	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	a0002	731	5	0	0	5	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	a0003	731	4	2	2	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	a0004	731	4	0	3	0	1	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	a0005	731	2	2	0	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	a0006	731	1	0	1	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	a0007	731	1	0	0	0	0	1	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	a0008	731	1	0	0	1	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	a0009	731	1	0	1	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	a0010	731	1	0	0	1	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	a0011	731	1	1	0	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGLN2_chr1_159913111_159930507	1/1	a0001	199	437	96	79	200	16	44	copy fasta	TAGLN2	chr1	159913111	159930507
TAGLN2_chr1_159913111_159930507	0/0	a0002	199	8	0	1	3	0	4	copy fasta	TAGLN2	chr1	159913111	159930507
TAGLN2_chr1_159913111_159930507	0/0	a0003	199	1	0	0	1	0	0	copy fasta	TAGLN2	chr1	159913111	159930507
TAGLN3_chr3_111993922_112018885	1/1	a0001	199	464	98	82	220	16	46	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN_chr11_117194370_117212464	1/1	a0001	201	455	89	84	214	16	50	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	a0002	201	4	3	1	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	a0003	201	1	0	1	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAL1_chr1_47211291_47237225	1/1	a0001	331	402	89	69	182	18	42	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	a0002	331	5	4	1	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	a0003	331	4	0	0	2	0	2	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	a0004	327	1	0	0	1	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	a0005	331	1	0	0	1	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	a0006	331	1	1	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL2_chr9_105657457_105668124	1/1	a0001	108	415	97	77	177	18	44	copy fasta	TAL2	chr9	105657457	105668124
TAL2_chr9_105657457_105668124	0/0	a0002	108	1	0	0	1	0	0	copy fasta	TAL2	chr9	105657457	105668124
TAL2_chr9_105657457_105668124	0/0	a0003	108	1	0	0	1	0	0	copy fasta	TAL2	chr9	105657457	105668124
TAL2_chr9_105657457_105668124	0/0	a0004	108	1	1	0	0	0	0	copy fasta	TAL2	chr9	105657457	105668124
TAL2_chr9_105657457_105668124	0/0	a0005	108	1	0	1	0	0	0	copy fasta	TAL2	chr9	105657457	105668124
TAL2_chr9_105657457_105668124	0/0	a0006	108	1	0	0	1	0	0	copy fasta	TAL2	chr9	105657457	105668124
TALDO1_chr11_742464_770012	1/1	a0001	337	411	90	73	180	18	48	copy fasta	TALDO1	chr11	742464	770012
TALDO1_chr11_742464_770012	0/0	a0002	337	3	3	0	0	0	0	copy fasta	TALDO1	chr11	742464	770012
TALDO1_chr11_742464_770012	0/0	a0003	337	1	1	0	0	0	0	copy fasta	TALDO1	chr11	742464	770012
TALDO1_chr11_742464_770012	0/0	a0004	337	1	0	1	0	0	0	copy fasta	TALDO1	chr11	742464	770012
TAMALIN_chr12_52001946_52020889	1/1	a0001	395	340	83	56	145	15	39	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	a0002	353	34	7	8	14	0	5	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	a0003	395	2	0	1	0	1	0	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	a0004	395	1	0	0	0	0	1	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	a0005	353	1	0	0	1	0	0	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	a0006	395	1	0	0	0	0	1	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	a0007	395	1	0	1	0	0	0	copy fasta	TAMALIN	chr12	52001946	52020889