JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TANK_chr2_161155428_161241230	0/0	a0003	425	11	1	0	9	1	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	a0004	425	2	2	0	0	0	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	a0005	425	2	0	0	0	2	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	a0006	425	1	1	0	0	0	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	a0007	425	1	0	0	1	0	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	a0008	425	1	0	1	0	0	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	a0009	425	1	0	0	0	0	1	copy fasta	TANK	chr2	161155428	161241230
TAOK1_chr17_29385363_29556903	1/1	a0001	1001	321	91	64	104	18	42	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	a0002	1001	4	0	0	4	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	a0003	1001	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK2_chr16_29968868_29993393	1/1	a0001	1235	319	69	59	149	10	30	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	a0002	1235	19	10	5	0	4	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	a0003	1235	3	3	0	0	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	a0004	1235	1	0	0	1	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	a0005	1235	1	0	0	1	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	a0006	1235	1	1	0	0	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	a0007	1235	1	0	0	1	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	a0008	1235	1	1	0	0	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK3_chr12_118144801_118377907	0/1	a0001	898	219	61	33	95	9	20	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	1/0	a0002	898	92	20	13	47	5	6	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	a0003	898	2	0	0	2	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	a0004	898	1	1	0	0	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAP1_chr6_32840209_32858704	0/1	a0001	748	367	57	72	188	14	35	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0002	748	53	5	9	30	1	8	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0003	748	11	9	2	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0004	748	8	1	0	6	0	1	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0005	748	6	6	0	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0006	748	6	5	1	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0007	748	5	2	2	0	0	1	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0008	748	3	2	1	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0009	748	3	0	0	0	1	2	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0010	748	3	3	0	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0011	748	2	2	0	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0012	748	1	0	0	1	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0013	748	1	1	0	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0014	748	1	0	1	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0015	748	1	1	0	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0016	748	1	0	0	0	0	1	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	a0017	748	1	0	0	1	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP2_chr6_32820415_32843739	0/0	a0000	0	159	20	28	84	1	26	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/1	a0001	686	185	45	34	72	12	21	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	a0002	686	50	1	16	32	1	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	a0003	686	41	12	3	24	1	1	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	a0004	686	22	7	3	12	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	a0005	686	13	2	4	3	3	1	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	a0006	686	4	4	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	a0007	686	3	3	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	a0008	686	3	3	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	a0009	686	2	2	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	a0010	686	1	0	0	1	0	0	copy fasta	TAP2	chr6	32820415	32843739