JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TCERG1L_chr10_131087391_131316721	0/0	a0003	587	7	6	1	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	a0004	586	2	0	0	2	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	a0005	1	1	1	0	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	a0006	586	1	1	0	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	a0007	586	1	0	0	0	1	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	a0008	586	1	0	0	1	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	a0009	586	1	0	0	0	1	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	a0010	586	1	0	1	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1_chr5_146442333_146516961	1/1	a0001	1115	298	76	49	131	8	32	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	a0002	1111	7	3	4	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	a0003	1109	5	1	1	1	2	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	a0004	1117	3	2	0	0	1	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	a0005	1113	3	2	1	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	a0006	1115	2	2	0	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	a0007	1115	1	0	1	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	a0008	1119	1	0	0	0	1	0	copy fasta	TCERG1	chr5	146442333	146516961
TCF12_chr15_56913644_57294853	1/0	a0001	706	308	81	51	130	12	33	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/1	a0002	706	20	0	18	0	0	1	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	a0003	706	1	0	1	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	a0004	706	1	1	0	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF15_chr20_599257_615309	0/1	a0001	199	413	81	80	194	12	45	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	0/0	a0002	199	14	13	1	0	0	0	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	1/0	a0003	199	1	0	0	0	0	0	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	0/0	a0004	199	1	0	0	0	0	1	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	0/0	a0005	199	1	0	1	0	0	0	copy fasta	TCF15	chr20	599257	615309
TCF19_chr6_31153589_31169215	0/1	a0001	345	265	65	49	107	11	32	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	a0002	345	131	17	15	83	4	12	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	a0003	345	23	7	8	7	0	1	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	a0004	345	7	1	4	0	2	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	a0005	235	6	0	0	6	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	a0006	235	6	0	0	2	1	3	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	a0007	345	4	0	0	4	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	a0008	345	3	3	0	0	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	a0009	235	1	0	0	1	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	a0010	345	1	0	1	0	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	a0011	345	1	0	1	0	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	a0012	345	1	1	0	0	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	a0013	345	1	0	0	1	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	a0014	235	1	0	0	1	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF20_chr22_42155013_42275653	0/1	a0001	1960	232	53	47	97	11	23	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	a0002	1960	67	7	12	40	5	3	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	a0003	1960	26	9	11	1	0	5	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	a0004	1960	13	13	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	a0005	1960	3	3	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	a0006	1960	3	0	0	1	0	2	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	a0007	1960	2	2	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	a0008	1960	1	1	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	a0009	1960	1	0	0	1	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	a0010	1960	1	0	0	1	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	a0011	1960	1	0	1	0	0	0	copy fasta	TCF20	chr22	42155013	42275653