JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TCF20_chr22_42155013_42275653	0/0	a0012	1960	1	1	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	a0013	1960	1	0	0	0	0	1	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	a0014	1960	1	0	1	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	a0015	1960	1	0	0	1	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	a0016	1960	1	1	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF21_chr6_133884113_133897257	1/1	a0001	179	401	72	80	191	16	40	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	a0002	179	27	26	0	1	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	a0003	179	3	0	3	0	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	a0004	179	2	0	0	2	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	a0005	79	1	0	0	1	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	a0006	179	1	0	1	0	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	a0007	179	1	0	0	1	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF23_chr2_27144004_27161974	1/1	a0001	214	382	87	72	167	18	36	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	a0002	214	2	2	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	a0003	214	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	a0004	214	1	0	0	1	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF24_chr8_66941501_66967591	1/1	a0001	167	289	77	52	113	12	33	copy fasta	TCF24	chr8	66941501	66967591
TCF24_chr8_66941501_66967591	0/0	a0002	167	20	3	0	11	0	6	copy fasta	TCF24	chr8	66941501	66967591
TCF24_chr8_66941501_66967591	0/0	a0003	167	1	0	0	0	0	1	copy fasta	TCF24	chr8	66941501	66967591
TCF25_chr16_89868592_89916379	1/1	a0001	676	269	70	62	84	14	37	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	a0002	676	24	18	2	0	0	4	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	a0003	676	1	0	0	1	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	a0004	676	1	0	0	1	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	a0005	676	1	0	0	1	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	a0006	676	1	1	0	0	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	a0007	676	1	0	0	0	0	1	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	a0008	676	1	0	0	1	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	a0009	676	1	1	0	0	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF3_chr19_1604292_1657615	1/1	a0001	654	235	73	67	51	10	32	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0002	654	57	0	9	46	0	2	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0003	654	37	3	0	25	2	7	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0004	654	3	2	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0005	654	3	3	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0006	654	2	2	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0007	654	1	0	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0008	654	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0009	654	1	1	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0010	654	1	1	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0011	654	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0012	654	1	1	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0013	654	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0014	654	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0015	654	1	1	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0016	654	1	0	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0017	654	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0018	654	1	0	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0019	654	1	0	0	0	0	1	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0020	654	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	a0021	654	1	1	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF4_chr18_55217185_55593192	1/1	a0001	671	122	52	26	26	2	14	copy fasta	TCF4	chr18	55217185	55593192