JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TESC_chr12_117033923_117104416	0/0	a0003	214	1	0	0	0	1	0	copy fasta	TESC	chr12	117033923	117104416
TESK1_chr9_35600262_35615033	1/1	a0001	626	381	88	74	155	14	48	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	a0002	626	4	4	0	0	0	0	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	a0003	626	2	0	0	2	0	0	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	a0004	626	1	0	0	1	0	0	copy fasta	TESK1	chr9	35600262	35615033
TESK2_chr1_45338883_45496163	1/0	a0001	571	274	70	46	122	11	24	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/1	a0002	571	8	0	1	0	5	1	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	a0003	571	1	0	0	0	0	1	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	a0004	77	1	0	1	0	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	a0005	571	1	0	0	1	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	a0006	571	1	0	0	1	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESMIN_chr11_68702440_68756520	1/1	a0001	508	281	79	57	116	3	24	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	a0002	508	12	2	4	2	3	1	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	a0003	508	3	0	0	3	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	a0004	508	1	0	0	1	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	a0005	508	1	0	1	0	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	a0006	508	1	1	0	0	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	a0007	508	1	0	0	0	0	1	copy fasta	TESMIN	chr11	68702440	68756520
TESPA1_chr12_54943015_54989762	1/1	a0001	521	229	71	42	89	8	17	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0002	521	106	6	11	75	1	13	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0003	521	12	0	7	0	4	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0004	521	4	3	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0005	521	4	4	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0006	521	4	3	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0007	521	3	0	3	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0008	521	2	0	0	2	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0009	521	2	0	0	0	0	2	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0010	521	2	1	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0011	521	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0012	521	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0013	521	1	0	0	0	1	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0014	521	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0015	521	1	0	0	0	0	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0016	521	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0017	525	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	a0018	521	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TES_chr7_116205539_116263783	1/1	a0001	421	372	78	67	174	14	37	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	a0002	421	10	0	0	10	0	0	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	a0003	421	3	0	0	0	0	3	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	a0004	421	1	0	1	0	0	0	copy fasta	TES	chr7	116205539	116263783
TET1_chr10_68555337_68699487	0/0	a0001	2136	92	23	15	40	4	10	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/1	a0002	2136	58	0	7	36	3	11	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	1/0	a0003	2136	36	19	8	4	1	3	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0004	2136	34	1	4	23	0	6	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0005	2136	11	7	4	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0006	2136	10	5	2	0	0	3	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0007	2136	8	0	1	7	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0008	2136	4	3	1	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0009	2136	3	1	2	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0010	2136	3	3	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487