JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TET1_chr10_68555337_68699487	0/0	a0011	2136	3	0	1	0	2	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0012	2136	2	2	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0013	2136	2	2	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0014	2136	2	2	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0015	2136	2	0	0	2	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0016	2136	2	0	2	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0017	2136	1	0	1	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0018	2136	1	0	0	0	0	1	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0019	2136	1	1	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0020	2136	1	1	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0021	2136	1	1	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0022	2136	1	1	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0023	2136	1	0	1	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0024	2136	1	0	0	0	0	1	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0025	2136	1	0	0	0	0	1	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	a0026	2136	1	0	1	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET2_chr4_105141876_105284803	1/0	a0001	2002	133	23	33	51	9	16	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0002	2002	60	2	10	32	4	12	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0003	2002	45	26	4	14	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0004	2002	45	0	5	38	1	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/1	a0005	2002	20	7	7	3	0	2	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0006	2002	17	16	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0007	2002	4	1	1	0	0	2	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0008	2002	4	4	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0009	2002	3	0	0	2	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0010	2002	3	0	0	3	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0011	2002	2	0	1	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0012	2002	2	2	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0013	2002	2	2	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0014	2002	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0015	1459	1	0	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0016	2002	1	0	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0017	2002	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0018	2002	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0019	2002	1	0	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0020	2002	1	0	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	a0021	2002	1	0	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET3_chr2_73979910_74113176	1/1	a0001	1795	241	72	49	86	10	22	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	a0002	1795	5	0	3	0	2	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	a0003	1795	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	a0004	1795	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	a0005	1795	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	a0006	1795	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	a0007	1795	1	0	0	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	a0008	1795	1	0	0	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TEX101_chr19_43409890_43423597	1/1	a0001	249	403	94	71	178	17	41	copy fasta	TEX101	chr19	43409890	43423597
TEX101_chr19_43409890_43423597	0/0	a0002	249	7	0	5	0	1	1	copy fasta	TEX101	chr19	43409890	43423597
TEX101_chr19_43409890_43423597	0/0	a0003	249	2	2	0	0	0	0	copy fasta	TEX101	chr19	43409890	43423597
TEX10_chr9_100297084_100357942	1/1	a0001	929	241	86	62	61	12	18	copy fasta	TEX10	chr9	100297084	100357942
TEX10_chr9_100297084_100357942	0/0	a0002	929	1	0	0	1	0	0	copy fasta	TEX10	chr9	100297084	100357942