JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TEX55_chr3_119141165_119156456	0/0	a0016	536	1	1	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0017	536	1	0	1	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0018	536	1	1	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0019	536	1	0	0	0	0	1	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0020	536	1	1	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX9_chr15_56360426_56435154	0/0	a0000	0	1	0	0	1	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	1/1	a0001	391	367	84	63	173	14	31	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	a0002	391	4	4	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	a0003	391	2	0	2	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	a0004	391	2	2	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	a0005	152	1	1	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	a0006	391	1	0	0	0	0	1	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	a0007	391	1	1	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	a0008	391	1	0	1	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TFAM_chr10_58380410_58404220	0/0	a0001	246	387	95	68	174	14	36	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	a0002	246	46	1	8	29	4	4	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	a0003	246	1	0	0	1	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAP2A_chr6_10391677_10420074	1/1	a0001	439	368	100	70	152	12	32	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2B_chr6_50813871_50852619	1/1	a0001	460	377	89	71	157	16	42	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	a0002	460	2	2	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	a0003	460	1	0	0	1	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	a0004	460	1	0	1	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	a0005	460	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2C_chr20_56624306_56644283	1/1	a0001	450	352	90	67	137	14	42	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	a0002	450	6	6	0	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	a0003	450	1	0	1	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	a0004	450	1	0	0	1	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2D_chr6_50708526_50778033	1/1	a0001	452	302	90	61	101	12	36	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2D_chr6_50708526_50778033	0/0	a0002	452	31	0	2	25	2	2	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2D_chr6_50708526_50778033	0/0	a0003	452	1	0	1	0	0	0	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2E_chr1_35568314_35600328	1/1	a0001	442	358	92	62	156	14	32	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	a0002	442	4	4	0	0	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	a0003	442	1	0	0	1	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	a0004	442	1	0	0	1	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	a0005	442	1	0	0	1	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	a0006	442	1	1	0	0	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	a0007	442	1	0	0	1	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	a0008	442	1	0	0	1	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	a0009	442	1	0	0	1	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	a0010	442	1	1	0	0	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP4_chr16_4252186_4278023	0/1	a0001	338	279	78	51	121	5	23	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	1/0	a0002	338	121	14	25	55	9	17	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	a0003	338	3	3	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	a0004	338	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFB1M_chr6_155251134_155319484	1/1	a0001	346	345	83	70	144	10	36	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	a0002	346	1	1	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	a0003	346	1	1	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	a0004	346	1	1	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB2M_chr1_246535561_246571261	1/1	a0001	396	435	98	81	195	18	41	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	a0002	396	8	0	0	8	0	0	copy fasta	TFB2M	chr1	246535561	246571261