JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TG_chr8_132861958_133139899	0/0	a0112	2768	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0113	2768	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0114	2768	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0115	2768	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0116	2768	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0117	2768	1	0	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0118	2768	1	0	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0119	2768	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0120	2768	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0121	2768	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0122	2768	1	0	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0123	2768	1	0	0	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0124	2768	1	0	0	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0125	2768	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0126	2768	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0127	2768	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0128	2768	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0129	2768	1	0	0	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0130	2768	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
THADA_chr2_43225851_43601038	1/0	a0001	1953	65	21	15	13	2	13	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0002	1953	35	5	10	10	2	8	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/1	a0003	1953	35	12	10	2	3	7	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0004	1953	10	4	0	1	0	5	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0005	1953	10	0	9	0	0	1	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0006	1953	10	6	1	0	1	2	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0007	1953	9	6	3	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0008	1953	5	5	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0009	1952	4	3	1	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0010	1953	4	3	1	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0011	1953	4	4	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0012	1953	2	0	0	2	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0013	1953	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0014	1953	1	0	0	0	0	1	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0015	1953	1	0	0	1	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0016	1953	1	0	0	0	0	1	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0017	1953	1	0	0	1	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0018	1953	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0019	1952	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0020	1953	1	0	0	0	0	1	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0021	1953	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0022	1953	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0023	1953	1	0	0	0	0	1	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0024	1953	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	a0025	1953	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THAP10_chr15_70876342_70897433	1/1	a0001	257	419	88	78	196	12	43	copy fasta	THAP10	chr15	70876342	70897433
THAP10_chr15_70876342_70897433	0/0	a0002	257	1	0	0	0	0	1	copy fasta	THAP10	chr15	70876342	70897433
THAP11_chr16_67837320_67849195	1/1	a0001	314	191	44	37	82	2	24	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	a0002	313	74	38	20	7	2	7	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	a0003	323	5	1	0	3	0	1	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	a0004	315	4	2	1	1	0	0	copy fasta	THAP11	chr16	67837320	67849195