JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TINAG_chr6_54303441_54395142	0/0	a0007	476	6	1	2	0	2	1	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0008	476	3	1	2	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0009	476	2	2	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0010	476	2	2	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0011	476	2	1	1	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0012	476	2	0	0	0	1	1	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0013	476	2	1	0	1	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0014	476	2	2	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0015	476	2	2	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0016	476	2	1	1	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0017	476	2	2	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0018	476	1	1	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0019	476	1	0	0	1	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0020	476	1	0	0	1	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0021	476	1	1	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0022	476	1	0	0	0	0	1	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0023	476	1	0	0	1	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0024	476	1	0	0	1	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINCR_chr19_5553167_5572953	1/1	a0001	87	396	95	82	157	16	44	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	a0002	87	1	0	0	1	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	a0003	87	1	1	0	0	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINF2_chr14_24234643_24247623	1/1	a0001	451	405	83	63	199	14	44	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	a0002	451	9	9	0	0	0	0	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	a0003	451	5	0	5	0	0	0	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	a0004	451	2	2	0	0	0	0	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	a0005	451	1	0	0	0	0	1	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	a0006	360	1	0	0	1	0	0	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	a0007	451	1	0	0	0	0	1	copy fasta	TINF2	chr14	24234643	24247623
TIPARP_chr3_156669590_156711770	1/1	a0001	657	348	83	64	142	16	41	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	a0002	657	1	0	0	1	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	a0003	657	1	0	0	1	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	a0004	657	1	0	0	0	0	1	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	a0005	657	1	1	0	0	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPIN_chr15_66331191_66361685	0/1	a0001	301	289	77	53	113	12	33	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	a0002	301	70	7	7	49	3	4	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	a0003	301	36	1	11	19	0	5	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	a0004	301	8	1	2	0	3	2	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	1/0	a0005	301	8	5	2	0	0	0	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	a0006	301	3	3	0	0	0	0	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	a0007	301	1	0	1	0	0	0	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	a0008	301	1	0	0	1	0	0	copy fasta	TIPIN	chr15	66331191	66361685
TIPRL_chr1_168173962_168207109	1/1	a0001	272	384	84	62	180	14	42	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	a0002	272	2	2	0	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIRAP_chr11_126278093_126299933	1/0	a0001	221	290	72	57	113	11	36	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	a0002	221	44	6	7	27	0	4	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/1	a0003	221	14	0	5	2	3	3	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	a0004	221	4	4	0	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	a0005	221	4	4	0	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	a0006	221	2	0	0	2	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	a0007	221	2	0	2	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933