JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM132D_chr12_129066726_129909025	0/0	a0005	1099	1	0	0	1	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	a0006	1099	1	0	1	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	a0007	1099	1	0	1	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	a0008	1099	1	0	0	0	0	1	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	a0009	1099	1	0	0	1	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132E_chr17_34574582_34644318	1/1	a0001	1074	381	83	72	160	17	47	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	a0002	1074	11	10	1	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	a0003	1074	3	0	0	3	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	a0004	1074	2	2	0	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	a0005	1074	1	0	0	1	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	a0006	1074	1	1	0	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	a0007	1074	1	0	0	0	1	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	a0008	1067	1	0	0	1	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	a0009	1074	1	0	0	1	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	a0010	1074	1	0	1	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	a0011	1074	1	0	0	0	0	1	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM134_chr11_67456710_67474251	1/1	a0001	195	350	93	66	139	14	36	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	a0002	24	1	0	0	1	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	a0003	195	1	1	0	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM135_chr11_87032934_87333824	0/1	a0001	458	142	49	26	39	5	22	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	1/0	a0002	458	105	20	21	48	5	10	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	a0003	458	25	4	0	19	0	2	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	a0004	458	1	1	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	a0005	458	1	0	1	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM138_chr11_61357374_61374509	1/1	a0001	162	247	85	44	72	8	36	copy fasta	TMEM138	chr11	61357374	61374509
TMEM138_chr11_61357374_61374509	0/0	a0002	162	1	1	0	0	0	0	copy fasta	TMEM138	chr11	61357374	61374509
TMEM139_chr7_143279958_143293048	1/1	a0001	216	299	86	58	97	16	40	copy fasta	TMEM139	chr7	143279958	143293048
TMEM139_chr7_143279958_143293048	0/0	a0002	216	2	2	0	0	0	0	copy fasta	TMEM139	chr7	143279958	143293048
TMEM139_chr7_143279958_143293048	0/0	a0003	216	1	0	1	0	0	0	copy fasta	TMEM139	chr7	143279958	143293048
TMEM139_chr7_143279958_143293048	0/0	a0004	216	1	0	0	1	0	0	copy fasta	TMEM139	chr7	143279958	143293048
TMEM139_chr7_143279958_143293048	0/0	a0005	216	1	0	1	0	0	0	copy fasta	TMEM139	chr7	143279958	143293048
TMEM140_chr7_135143072_135171215	0/0	a0001	185	169	34	38	60	8	29	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/1	a0002	185	162	27	30	90	3	11	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	1/0	a0003	185	49	33	2	11	0	2	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	a0004	185	6	0	4	0	1	1	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	a0005	185	1	0	0	0	0	1	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	a0006	185	1	0	0	1	0	0	copy fasta	TMEM140	chr7	135143072	135171215
TMEM141_chr9_136786344_136798317	1/1	a0001	108	386	96	73	162	16	37	copy fasta	TMEM141	chr9	136786344	136798317
TMEM141_chr9_136786344_136798317	0/0	a0002	108	2	0	1	0	0	1	copy fasta	TMEM141	chr9	136786344	136798317
TMEM143_chr19_48327356_48368940	1/1	a0001	459	338	91	72	125	8	40	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	a0002	459	3	3	0	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	a0003	459	3	0	1	0	2	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	a0004	459	1	0	1	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	a0005	459	1	1	0	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	a0006	459	1	0	0	1	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	a0007	459	1	0	0	1	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	a0008	459	1	1	0	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	a0009	459	1	0	0	1	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM144_chr4_158205486_158260416	1/1	a0001	345	269	90	58	75	14	30	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	a0002	345	2	2	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416