JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM201_chr1_9583911_9619877	0/0	a0003	666	11	8	1	0	0	2	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	a0004	666	9	9	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	a0005	666	6	6	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	a0006	666	2	2	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	a0007	666	1	1	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	a0008	666	1	1	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	a0009	666	1	0	1	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	a0010	666	1	0	0	0	0	1	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	a0011	666	1	1	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM202_chr15_72393305_72413367	1/1	a0001	273	374	83	62	177	12	38	copy fasta	TMEM202	chr15	72393305	72413367
TMEM202_chr15_72393305_72413367	0/0	a0002	273	19	11	8	0	0	0	copy fasta	TMEM202	chr15	72393305	72413367
TMEM202_chr15_72393305_72413367	0/0	a0003	273	1	0	0	1	0	0	copy fasta	TMEM202	chr15	72393305	72413367
TMEM202_chr15_72393305_72413367	0/0	a0004	273	1	1	0	0	0	0	copy fasta	TMEM202	chr15	72393305	72413367
TMEM202_chr15_72393305_72413367	0/0	a0005	273	1	1	0	0	0	0	copy fasta	TMEM202	chr15	72393305	72413367
TMEM203_chr9_137199082_137210648	1/1	a0001	136	394	90	72	172	16	42	copy fasta	TMEM203	chr9	137199082	137210648
TMEM204_chr16_1528666_1560568	1/1	a0001	226	370	78	68	178	8	36	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	a0002	226	40	18	2	12	2	6	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	a0003	226	10	0	0	10	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM205_chr19_11337778_11351268	1/1	a0001	189	363	92	66	157	14	32	copy fasta	TMEM205	chr19	11337778	11351268
TMEM205_chr19_11337778_11351268	0/0	a0002	189	1	1	0	0	0	0	copy fasta	TMEM205	chr19	11337778	11351268
TMEM205_chr19_11337778_11351268	0/0	a0003	189	1	0	0	1	0	0	copy fasta	TMEM205	chr19	11337778	11351268
TMEM205_chr19_11337778_11351268	0/0	a0004	189	1	1	0	0	0	0	copy fasta	TMEM205	chr19	11337778	11351268
TMEM207_chr3_190423655_190454901	1/1	a0001	146	442	87	76	220	15	42	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	a0002	146	19	6	7	3	1	2	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	a0003	146	2	2	0	0	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	a0004	146	1	0	0	1	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	a0005	146	1	1	0	0	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	a0006	146	1	0	1	0	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM208_chr16_67222130_67234278	1/1	a0001	173	260	92	58	72	10	26	copy fasta	TMEM208	chr16	67222130	67234278
TMEM209_chr7_130159713_130210406	1/1	a0001	561	323	90	69	110	12	40	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	a0002	561	7	0	3	4	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	a0003	561	2	0	2	0	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	a0004	561	2	0	2	0	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	a0005	561	1	0	0	1	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	a0006	561	1	0	0	1	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM210_chr9_137165858_137177056	1/1	a0001	147	404	93	78	169	16	46	copy fasta	TMEM210	chr9	137165858	137177056
TMEM210_chr9_137165858_137177056	0/0	a0002	147	1	1	0	0	0	0	copy fasta	TMEM210	chr9	137165858	137177056
TMEM210_chr9_137165858_137177056	0/0	a0003	147	1	0	0	1	0	0	copy fasta	TMEM210	chr9	137165858	137177056
TMEM212_chr3_171838349_171864318	1/1	a0001	194	435	95	76	200	18	44	copy fasta	TMEM212	chr3	171838349	171864318
TMEM212_chr3_171838349_171864318	0/0	a0002	194	1	1	0	0	0	0	copy fasta	TMEM212	chr3	171838349	171864318
TMEM213_chr7_138792994_138811759	0/1	a0001	107	312	65	51	157	11	27	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	1/0	a0002	107	140	28	28	55	7	21	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	a0003	107	4	3	1	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM214_chr2_27027965_27046694	1/1	a0001	689	246	41	44	134	9	16	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	a0002	689	101	44	35	7	4	11	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	a0003	689	3	0	0	3	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	a0004	689	2	2	0	0	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	a0005	689	2	2	0	0	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	a0006	689	1	0	0	1	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	a0007	689	1	0	0	0	0	1	copy fasta	TMEM214	chr2	27027965	27046694