JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TONSL_chr8_144423775_144449440	0/0	a0003	1378	60	1	8	51	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0004	1378	8	8	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0005	1378	7	6	1	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0006	1378	7	7	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0007	1378	5	3	2	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0008	1378	2	2	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0009	1378	2	0	2	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0010	1378	2	0	0	0	0	2	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0011	1378	2	0	0	2	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0012	1378	2	2	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0013	1378	1	0	1	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0014	1378	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0015	1378	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0016	1378	1	1	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0017	1378	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0018	1378	1	1	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0019	1378	1	0	0	0	0	1	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0020	1378	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0021	1378	1	1	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0022	1378	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TOP1MT_chr8_143304324_143339880	0/1	a0001	601	219	5	50	128	7	28	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	1/0	a0002	601	90	19	16	43	5	6	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0003	601	79	45	11	10	4	9	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0004	601	13	13	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0005	601	6	5	1	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0006	601	2	1	1	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0007	601	2	0	0	2	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0008	601	2	0	0	2	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0009	601	2	0	0	0	0	2	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0010	601	2	0	1	0	0	1	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0011	601	2	1	1	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0012	601	2	2	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0013	601	1	1	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0014	601	1	0	0	1	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0015	601	1	0	0	1	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0016	601	1	0	0	1	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0017	601	1	1	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0018	601	1	0	1	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0019	601	1	0	0	1	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0020	601	1	0	0	1	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	a0021	601	1	1	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1_chr20_41023822_41129487	1/1	a0001	765	378	83	63	182	14	34	copy fasta	TOP1	chr20	41023822	41129487
TOP1_chr20_41023822_41129487	0/0	a0002	765	1	1	0	0	0	0	copy fasta	TOP1	chr20	41023822	41129487
TOP1_chr20_41023822_41129487	0/0	a0003	765	1	0	1	0	0	0	copy fasta	TOP1	chr20	41023822	41129487
TOP2A_chr17_40383525_40422896	1/1	a0001	1531	238	66	45	87	10	28	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	a0002	1531	14	10	3	0	1	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	a0003	1531	1	0	0	0	1	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	a0004	1531	1	1	0	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	a0005	1531	1	0	1	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	a0006	1531	1	0	1	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896