JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIM51G_chr11_48970498_48988885	1/0	a0004	452	10	9	0	0	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	a0005	452	3	2	1	0	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	a0006	342	2	0	0	2	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	a0007	452	1	0	1	0	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	a0008	452	1	0	0	1	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	a0009	452	1	1	0	0	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	a0010	452	1	0	0	1	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	a0011	452	1	1	0	0	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	a0012	201	1	0	0	1	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	a0013	201	1	0	0	1	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51_chr11_55878297_55896810	0/0	a0000	0	1	0	0	0	0	1	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	a0001	452	208	26	30	123	6	23	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	a0002	452	109	21	20	55	1	12	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/1	a0003	452	75	31	11	25	2	5	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	a0004	452	8	8	0	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	a0005	452	5	1	2	0	2	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	a0006	452	5	0	3	0	2	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	a0007	452	5	5	0	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	a0008	452	3	0	0	3	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	1/0	a0009	452	3	2	0	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	a0010	452	3	2	1	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	a0011	452	3	0	2	0	1	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	a0012	452	2	0	0	0	0	2	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	a0013	20	2	2	0	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	a0014	452	1	0	1	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	a0015	452	1	0	0	1	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	a0016	452	1	0	0	0	0	1	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	a0017	452	1	0	0	1	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM52_chr5_181250147_181266143	1/1	a0001	287	208	12	43	123	7	21	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	a0002	286	198	84	23	65	7	19	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	a0003	286	4	4	0	0	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM54_chr2_27277429_27312435	1/1	a0001	358	274	86	60	86	14	26	copy fasta	TRIM54	chr2	27277429	27312435
TRIM54_chr2_27277429_27312435	0/0	a0002	358	1	0	0	0	0	1	copy fasta	TRIM54	chr2	27277429	27312435
TRIM54_chr2_27277429_27312435	0/0	a0003	358	1	0	0	0	0	1	copy fasta	TRIM54	chr2	27277429	27312435
TRIM55_chr8_66122129_66180485	1/1	a0001	548	178	27	40	76	12	21	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	a0002	548	68	58	5	0	0	5	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	a0003	548	1	0	1	0	0	0	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	a0004	548	1	1	0	0	0	0	copy fasta	TRIM55	chr8	66122129	66180485
TRIM56_chr7_101080481_101102967	1/1	a0001	755	384	92	70	164	12	44	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	a0002	755	19	0	0	19	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	a0003	755	11	0	0	10	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	a0004	755	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	a0005	755	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	a0006	755	1	0	0	0	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	a0007	755	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	a0008	755	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	a0009	755	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM58_chr1_247852187_247885138	0/0	a0001	486	161	31	26	78	5	21	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	1/0	a0002	486	119	43	23	41	5	6	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/1	a0003	486	86	3	19	42	6	15	copy fasta	TRIM58	chr1	247852187	247885138