JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIM75_chr4_165048866_165065554	0/0	a0003	468	4	0	0	3	0	1	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	a0004	468	2	2	0	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	a0005	468	1	0	0	1	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	a0006	468	1	1	0	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	a0007	468	1	0	0	0	0	1	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	a0008	472	1	0	1	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM77_chr11_89705299_89722872	1/1	a0001	450	404	85	69	194	13	41	copy fasta	TRIM77	chr11	89705299	89722872
TRIM77_chr11_89705299_89722872	0/0	a0002	450	7	0	3	0	3	1	copy fasta	TRIM77	chr11	89705299	89722872
TRIM77_chr11_89705299_89722872	0/0	a0003	450	6	6	0	0	0	0	copy fasta	TRIM77	chr11	89705299	89722872
TRIM77_chr11_89705299_89722872	0/0	a0004	450	1	1	0	0	0	0	copy fasta	TRIM77	chr11	89705299	89722872
TRIM77_chr11_89705299_89722872	0/0	a0005	450	1	0	0	1	0	0	copy fasta	TRIM77	chr11	89705299	89722872
TRIM77_chr11_89705299_89722872	0/0	a0006	450	1	0	0	1	0	0	copy fasta	TRIM77	chr11	89705299	89722872
TRIM7_chr5_181188924_181210196	0/0	a0000	0	1	1	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	1/0	a0001	511	162	7	47	77	7	23	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0002	511	93	22	10	54	2	5	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0003	511	35	32	1	2	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/1	a0004	511	34	2	3	19	1	8	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0005	511	31	13	3	10	0	5	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0006	511	10	9	1	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0007	511	5	0	1	3	0	1	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0008	511	4	0	0	4	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0009	511	4	0	0	4	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0010	511	3	3	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0011	511	2	0	0	0	0	2	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0012	511	2	1	1	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0013	511	2	0	0	1	0	1	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0014	511	1	0	0	0	0	1	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0015	511	1	0	1	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0016	511	1	0	1	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0017	511	1	1	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0018	511	1	1	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	a0019	511	1	0	1	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM8_chr10_102639479_102663318	1/1	a0001	551	363	86	72	147	12	44	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	a0002	551	10	0	0	10	0	0	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	a0003	551	1	0	0	1	0	0	copy fasta	TRIM8	chr10	102639479	102663318
TRIM9_chr14_50970266_51100105	0/0	a0001	795	186	35	42	84	7	18	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	1/1	a0002	795	150	52	25	50	5	16	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	a0003	795	3	0	3	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	a0004	795	2	0	0	0	2	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	a0005	795	1	1	0	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIML1_chr4_188134441_188152743	1/1	a0001	468	154	46	17	73	4	12	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	a0002	468	56	17	19	6	4	10	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	a0003	468	8	5	3	0	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	a0004	468	3	0	0	3	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	a0005	468	2	1	1	0	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	a0006	468	2	2	0	0	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	a0007	352	1	0	0	1	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	a0008	468	1	1	0	0	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	a0009	468	1	0	0	1	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML2_chr4_188086272_188114603	1/1	a0001	437	401	81	69	186	18	45	copy fasta	TRIML2	chr4	188086272	188114603