JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTC23_chr15_99131323_99254581	0/0	a0002	447	6	3	2	0	1	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	a0003	447	2	2	0	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	a0004	447	2	2	0	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	a0005	447	1	0	0	1	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	a0006	447	1	0	0	0	0	1	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	a0007	447	1	1	0	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	a0008	447	1	0	0	1	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	a0009	447	1	0	1	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC24_chr1_156574723_156592719	1/0	a0001	582	258	51	39	136	5	26	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/1	a0002	582	110	5	34	53	7	10	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0003	401	19	8	3	5	2	1	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0004	582	13	11	2	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0005	582	10	0	0	7	0	3	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0006	582	6	6	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0007	582	6	6	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0008	582	4	4	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0009	401	4	4	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0010	401	3	0	0	0	0	3	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0011	582	2	1	0	1	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0012	582	1	0	1	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0013	582	1	0	1	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0014	582	1	0	0	1	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0015	582	1	0	0	1	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0016	582	1	0	0	0	0	1	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0017	582	1	1	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	a0018	582	1	1	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC27_chr2_32623050_32826051	1/1	a0001	843	219	60	44	87	13	13	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	a0002	843	48	19	7	21	0	1	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	a0003	843	43	1	3	38	0	1	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	a0004	843	3	0	1	0	1	1	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	a0005	843	3	3	0	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	a0006	843	2	2	0	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	a0007	843	1	0	1	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	a0008	843	1	1	0	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	a0009	843	1	0	0	0	0	1	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	a0010	843	1	0	0	1	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	a0011	843	1	0	0	1	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	a0012	843	1	0	0	0	0	1	copy fasta	TTC27	chr2	32623050	32826051
TTC28_chr22_27973014_28684840	0/0	a0001	2481	170	53	30	59	5	23	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	a0002	2481	6	6	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	a0003	2481	5	0	3	0	2	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	a0004	2481	3	0	0	0	3	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	a0005	2481	2	0	1	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	a0006	2481	2	2	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	a0007	2481	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	a0008	2481	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	a0009	2481	1	0	1	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	a0010	2481	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	a0011	2481	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	a0012	2481	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840