JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTC28_chr22_27973014_28684840	0/0	a0013	2481	1	0	0	0	0	1	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	a0014	2481	1	0	1	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC29_chr4_146701617_146950864	0/0	a0001	475	92	13	16	48	4	11	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	1/1	a0002	475	89	25	17	36	4	5	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	a0003	475	69	16	10	33	1	9	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	a0004	475	17	16	1	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	a0005	475	8	7	1	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	a0006	475	8	7	1	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	a0007	475	2	1	0	1	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	a0008	475	2	1	0	0	1	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	a0009	475	1	1	0	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	a0010	475	1	1	0	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	a0011	475	1	1	0	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	a0012	475	1	1	0	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	a0013	475	1	0	0	0	0	1	copy fasta	TTC29	chr4	146701617	146950864
TTC31_chr2_74478081_74499559	0/1	a0001	519	192	75	29	75	2	10	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	1/0	a0002	519	121	15	38	36	12	19	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	a0003	519	5	5	0	0	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	a0004	519	3	2	1	0	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	a0005	519	2	0	0	0	0	2	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	a0006	519	2	0	0	0	0	2	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	a0007	519	2	0	0	0	0	2	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	a0008	519	2	1	1	0	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	a0009	486	1	0	1	0	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	a0010	519	1	0	0	0	0	1	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	a0011	519	1	0	0	1	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC32_chr2_19891631_19906983	1/1	a0001	151	420	96	71	189	18	44	copy fasta	TTC32	chr2	19891631	19906983
TTC32_chr2_19891631_19906983	0/0	a0002	151	3	2	1	0	0	0	copy fasta	TTC32	chr2	19891631	19906983
TTC32_chr2_19891631_19906983	0/0	a0003	151	1	0	0	1	0	0	copy fasta	TTC32	chr2	19891631	19906983
TTC33_chr5_40706576_40760961	1/1	a0001	262	383	91	78	156	16	40	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	a0002	262	10	0	0	10	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	a0003	262	1	1	0	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC36_chr11_118522474_118535993	1/1	a0001	189	406	97	72	177	12	46	copy fasta	TTC36	chr11	118522474	118535993
TTC36_chr11_118522474_118535993	0/0	a0002	189	1	1	0	0	0	0	copy fasta	TTC36	chr11	118522474	118535993
TTC36_chr11_118522474_118535993	0/0	a0003	189	1	0	1	0	0	0	copy fasta	TTC36	chr11	118522474	118535993
TTC36_chr11_118522474_118535993	0/0	a0004	189	1	0	0	1	0	0	copy fasta	TTC36	chr11	118522474	118535993
TTC36_chr11_118522474_118535993	0/0	a0005	189	1	0	1	0	0	0	copy fasta	TTC36	chr11	118522474	118535993
TTC38_chr22_46263008_46299008	0/1	a0001	469	211	81	50	40	10	29	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	a0002	469	8	1	3	0	2	2	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	a0003	469	3	3	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	a0004	469	2	2	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	a0005	469	1	1	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	1/0	a0006	469	1	0	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	a0007	469	1	0	0	1	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	a0008	324	1	0	0	1	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	a0009	469	1	1	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	a0010	469	1	0	0	0	0	1	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	a0011	469	1	0	1	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	a0012	469	1	1	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC39A_chr1_51282258_51335562	1/1	a0001	577	308	82	64	112	16	32	copy fasta	TTC39A	chr1	51282258	51335562