JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UFL1_chr6_96516806_96560276	0/0	a0003	794	5	0	0	5	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	a0004	794	4	0	0	4	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	a0005	794	2	2	0	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	a0006	794	2	2	0	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	a0007	794	2	2	0	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	a0008	794	1	0	0	0	0	1	copy fasta	UFL1	chr6	96516806	96560276
UFM1_chr13_38344851_38368619	1/1	a0001	85	288	100	44	98	14	30	copy fasta	UFM1	chr13	38344851	38368619
UFSP1_chr7_100883721_100894715	1/0	a0001	142	380	96	60	170	15	38	copy fasta	UFSP1	chr7	100883721	100894715
UFSP1_chr7_100883721_100894715	0/1	a0002	142	25	2	10	5	1	6	copy fasta	UFSP1	chr7	100883721	100894715
UFSP1_chr7_100883721_100894715	0/0	a0003	142	1	0	0	1	0	0	copy fasta	UFSP1	chr7	100883721	100894715
UFSP2_chr4_185394537_185430964	1/1	a0001	469	290	88	47	98	12	43	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	a0002	469	3	3	0	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	a0003	469	2	0	2	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	a0004	469	1	0	0	1	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	a0005	469	1	0	1	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	a0006	469	1	0	0	1	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	a0007	469	1	0	0	0	0	1	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	a0008	469	1	1	0	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UGCG_chr9_111891814_111940369	1/1	a0001	394	423	90	76	197	18	40	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	a0002	394	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGDH_chr4_39493755_39532439	1/1	a0001	494	413	93	74	185	15	44	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	a0002	494	1	1	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	a0003	494	1	0	0	0	1	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	a0004	494	1	0	0	1	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGGT1_chr2_128086200_128200677	1/1	a0001	1555	312	79	60	128	14	29	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	a0002	1555	3	2	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	a0003	1555	3	0	0	3	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	a0004	1555	2	0	0	2	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	a0005	1555	2	2	0	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	a0006	1555	2	2	0	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	a0007	1555	1	0	0	0	0	1	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	a0008	1555	1	0	1	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	a0009	1555	1	0	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	a0010	1555	1	0	1	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	a0011	1555	1	0	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	a0012	1555	1	0	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	a0013	1555	1	1	0	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	a0014	1555	1	0	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT2_chr13_95796580_96058401	0/1	a0001	1516	167	29	23	94	4	16	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	1/0	a0002	1516	56	21	12	20	0	2	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0003	1516	55	11	3	32	4	5	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0004	1516	14	0	4	5	2	3	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0005	1516	10	9	1	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0006	1516	6	6	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0007	1516	3	0	2	0	1	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0008	1516	3	3	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0009	1516	2	2	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0010	1516	2	2	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0011	1516	1	0	1	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0012	1516	1	0	0	0	1	0	copy fasta	UGGT2	chr13	95796580	96058401