JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VARS2_chr6_30909238_30931459	0/0	a0012	1063	1	1	0	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0013	1063	1	0	0	0	0	1	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0014	1063	1	0	1	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0015	1063	1	0	1	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0016	1063	1	1	0	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0017	1063	1	0	0	1	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0018	1063	1	0	0	1	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0019	1063	1	0	0	1	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0020	1063	1	1	0	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VASH1_chr14_76756468_76788015	1/1	a0001	365	429	97	80	184	16	50	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	a0002	365	1	0	0	1	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	a0003	365	1	0	0	1	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	a0004	365	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH2_chr1_212945541_212996585	1/1	a0001	355	371	96	59	172	14	28	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	a0002	355	4	0	2	0	0	2	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	a0003	355	1	0	1	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	a0004	355	1	0	1	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	a0005	355	1	0	1	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASN_chr16_4366848_4388538	0/1	a0001	673	231	65	55	77	9	24	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	a0002	673	106	32	17	39	2	16	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	a0003	673	7	0	5	0	1	1	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	a0004	673	3	0	0	3	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	a0005	673	1	0	1	0	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	a0006	673	1	0	0	1	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	a0007	673	1	0	0	1	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	a0008	673	1	1	0	0	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	a0009	673	1	0	0	1	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	a0010	673	1	0	0	1	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	a0011	673	1	0	0	0	0	1	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	a0012	673	1	0	0	1	0	0	copy fasta	VASN	chr16	4366848	4388538
VASP_chr19_45502479_45531983	1/1	a0001	380	394	89	72	173	14	44	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	a0002	380	5	5	0	0	0	0	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	a0003	380	5	0	0	5	0	0	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	a0004	380	1	1	0	0	0	0	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	a0005	380	1	1	0	0	0	0	copy fasta	VASP	chr19	45502479	45531983
VAT1L_chr16_77783564_77985107	1/1	a0001	419	333	85	58	130	16	42	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	a0002	419	5	5	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	a0003	419	3	0	0	3	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	a0004	419	1	0	0	1	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1_chr17_43009607_43027385	1/1	a0001	393	339	90	62	130	12	43	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	a0002	393	4	0	0	2	0	2	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	a0003	393	1	0	0	0	0	1	copy fasta	VAT1	chr17	43009607	43027385
VAV1_chr19_6767708_6862361	1/1	a0001	845	297	90	56	101	9	39	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	a0002	845	7	0	2	1	3	1	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	a0003	845	1	1	0	0	0	0	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	a0004	845	1	1	0	0	0	0	copy fasta	VAV1	chr19	6767708	6862361
VAV2_chr9_133756894_133997324	0/0	a0001	878	108	63	26	3	6	10	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	1/1	a0002	878	87	18	16	35	1	15	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	a0003	878	2	0	1	0	1	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	a0004	878	1	0	0	0	0	1	copy fasta	VAV2	chr9	133756894	133997324