JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VGLL3_chr3_86932973_86996149	0/0	a0002	326	1	0	0	1	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL4_chr3_11551069_11648915	0/1	a0001	296	356	92	60	152	14	37	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	1/0	a0002	296	29	0	8	14	0	6	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	a0003	296	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	a0004	296	1	0	0	0	0	1	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	a0005	296	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VHLL_chr1_156293624_156304307	1/1	a0001	139	387	84	69	178	16	38	copy fasta	VHLL	chr1	156293624	156304307
VHLL_chr1_156293624_156304307	0/0	a0002	139	1	0	1	0	0	0	copy fasta	VHLL	chr1	156293624	156304307
VHL_chr3_10136778_10158667	1/1	a0001	213	405	94	78	171	14	46	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	a0002	213	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	a0003	213	1	0	0	1	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	a0004	213	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VIL1_chr2_218414123_218458295	1/1	a0001	827	313	72	51	126	16	46	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	a0002	827	6	6	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	a0003	827	5	5	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	a0004	827	5	5	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	a0005	827	2	2	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	a0006	827	1	0	1	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	a0007	827	1	1	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	a0008	827	1	0	0	1	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	a0009	827	1	0	0	1	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	a0010	827	1	1	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VILL_chr3_37985786_38012185	1/1	a0001	856	225	39	49	101	8	26	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	a0002	856	61	30	9	8	2	12	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	a0003	857	25	5	1	18	0	1	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	a0004	856	4	3	1	0	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	a0005	857	3	0	2	1	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	a0006	856	2	0	2	0	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	a0007	856	1	0	0	1	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	a0008	856	1	0	0	0	0	1	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	a0009	856	1	1	0	0	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	a0010	857	1	0	0	1	0	0	copy fasta	VILL	chr3	37985786	38012185
VIM_chr10_17223241_17242593	1/1	a0001	466	404	96	85	161	18	42	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	a0002	466	2	2	0	0	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	a0003	466	1	0	0	1	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	a0004	466	1	0	1	0	0	0	copy fasta	VIM	chr10	17223241	17242593
VIPAS39_chr14_77421675_77462601	1/1	a0001	493	233	86	53	44	14	34	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	a0002	85	4	2	1	0	0	1	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	a0003	493	2	0	0	2	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	a0004	493	1	0	0	1	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	a0005	493	1	1	0	0	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	a0006	493	1	1	0	0	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	a0007	493	1	0	0	1	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	a0008	493	1	0	0	0	0	1	copy fasta	VIPAS39	chr14	77421675	77462601
VIPR1_chr3_42497643_42542568	1/1	a0001	457	382	84	68	169	18	41	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	a0002	457	15	15	0	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	a0003	457	6	0	0	6	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	a0004	457	6	0	0	6	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	a0005	457	1	1	0	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	a0006	457	1	0	0	1	0	0	copy fasta	VIPR1	chr3	42497643	42542568