JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VMO1_chr17_4780285_4791364	0/1	a0002	202	172	26	32	75	7	31	copy fasta	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	a0003	202	45	4	10	25	4	2	copy fasta	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	a0004	202	2	2	0	0	0	0	copy fasta	VMO1	chr17	4780285	4791364
VMP1_chr17_59702654_59847255	1/1	a0001	406	285	86	49	112	6	30	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	a0002	406	1	0	1	0	0	0	copy fasta	VMP1	chr17	59702654	59847255
VN1R1_chr19_57449790_57462140	1/0	a0001	353	247	68	49	94	9	26	copy fasta	VN1R1	chr19	57449790	57462140
VN1R1_chr19_57449790_57462140	0/1	a0002	353	181	25	23	107	5	20	copy fasta	VN1R1	chr19	57449790	57462140
VN1R1_chr19_57449790_57462140	0/0	a0003	353	1	1	0	0	0	0	copy fasta	VN1R1	chr19	57449790	57462140
VN1R1_chr19_57449790_57462140	0/0	a0004	353	1	0	0	1	0	0	copy fasta	VN1R1	chr19	57449790	57462140
VN1R2_chr19_53253292_53264602	1/0	a0001	395	295	59	59	132	10	34	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/1	a0002	395	153	31	27	79	3	12	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	a0003	395	3	3	0	0	0	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	a0004	395	2	0	0	2	0	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	a0005	395	1	0	0	1	0	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	a0006	395	1	0	0	0	0	1	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	a0007	395	1	0	0	0	0	1	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	a0008	395	1	1	0	0	0	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	a0009	395	1	0	0	0	1	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R4_chr19_53261676_53272723	1/0	a0001	301	205	33	34	111	7	19	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/1	a0002	301	143	13	25	86	3	15	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	a0003	301	80	22	20	21	4	13	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	a0004	301	8	8	0	0	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	a0005	301	5	5	0	0	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	a0006	301	4	3	1	0	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	a0007	301	3	3	0	0	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	a0008	301	3	3	0	0	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	a0009	13	2	2	0	0	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	a0010	301	2	0	0	2	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	a0011	301	1	0	0	0	0	1	copy fasta	VN1R4	chr19	53261676	53272723
VNN1_chr6_132675849_132719055	0/0	a0000	0	13	13	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	a0001	513	175	44	31	78	2	20	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	1/1	a0002	513	105	6	29	49	9	10	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	a0003	513	83	1	21	51	4	6	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	a0004	513	22	15	1	1	1	4	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	a0005	513	4	4	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	a0006	513	3	0	3	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	a0007	513	3	0	0	3	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	a0008	513	2	0	1	0	0	1	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	a0009	513	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	a0010	513	1	0	0	0	0	1	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	a0011	513	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	a0012	513	1	0	0	0	0	1	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	a0013	513	1	0	0	1	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	a0014	513	1	0	0	1	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	a0015	513	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	a0016	513	1	0	0	0	0	1	copy fasta	VNN1	chr6	132675849	132719055
VNN2_chr6_132738870_132762904	0/1	a0001	520	414	83	78	187	18	47	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	a0002	520	10	10	0	0	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	a0003	520	2	2	0	0	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	a0004	520	2	0	2	0	0	0	copy fasta	VNN2	chr6	132738870	132762904