JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VPS9D1_chr16_89702134_89725898	0/0	a0012	631	1	0	0	1	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VRK1_chr14_96792382_96886609	1/1	a0001	396	277	88	60	77	10	40	copy fasta	VRK1	chr14	96792382	96886609
VRK1_chr14_96792382_96886609	0/0	a0002	374	1	0	0	1	0	0	copy fasta	VRK1	chr14	96792382	96886609
VRK2_chr2_58041806_58164871	1/0	a0001	508	242	76	42	91	11	21	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/1	a0002	508	91	8	24	43	3	12	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	a0003	508	2	2	0	0	0	0	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	a0004	508	1	1	0	0	0	0	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	a0005	508	1	0	0	1	0	0	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	a0006	508	1	0	0	1	0	0	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	a0007	508	1	1	0	0	0	0	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	a0008	508	1	0	0	0	0	1	copy fasta	VRK2	chr2	58041806	58164871
VRK3_chr19_49971468_50030372	1/1	a0001	474	325	61	58	159	10	35	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	a0002	467	21	0	0	17	0	4	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	a0003	474	2	2	0	0	0	0	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	a0004	474	1	0	0	0	0	1	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	a0005	474	1	1	0	0	0	0	copy fasta	VRK3	chr19	49971468	50030372
VRTN_chr14_74343471_74365008	1/1	a0001	702	415	82	74	193	18	46	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	a0002	702	3	3	0	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	a0003	702	2	2	0	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	a0004	702	2	0	0	0	0	2	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	a0005	702	1	0	0	1	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	a0006	702	1	0	1	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	a0007	702	1	0	0	1	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	a0008	702	1	1	0	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	a0009	702	1	0	0	1	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	a0010	702	1	0	1	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VSIG10L2_chr11_125941044_125961319	1/0	a0001	793	151	40	18	74	5	13	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/1	a0002	793	121	19	20	65	4	12	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0003	793	60	12	18	15	3	12	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0004	213	55	1	18	32	0	4	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0005	793	18	14	2	0	0	2	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0006	793	17	0	1	14	0	2	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0007	793	4	0	0	4	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0008	793	4	3	1	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0009	793	2	0	0	0	0	2	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0010	793	2	2	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0011	793	1	1	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0012	213	1	0	0	1	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0013	793	1	1	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0014	793	1	1	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0015	793	1	1	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0016	793	1	1	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0017	531	1	0	1	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0018	793	1	0	1	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0019	793	1	0	0	1	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0020	793	1	0	0	1	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0021	793	1	0	0	0	0	1	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	a0022	793	1	0	0	1	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L_chr19_51326541_51347139	0/1	a0000	0	450	96	78	209	18	48	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	1/0	a0001	867	1	0	0	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139