JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZFP69B_chr1_40445476_40468715	0/0	a0006	534	1	0	1	0	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	a0007	534	1	0	0	1	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69_chr1_40472290_40501343	1/1	a0001	526	384	73	58	198	14	39	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	a0002	526	13	7	4	0	2	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	a0003	526	2	2	0	0	0	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	a0004	526	2	0	0	0	2	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	a0005	526	2	2	0	0	0	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	a0006	526	1	0	0	0	0	1	copy fasta	ZFP69	chr1	40472290	40501343
ZFP82_chr19_36383630_36423644	1/1	a0001	532	382	93	68	169	12	38	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	a0002	532	1	1	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	a0003	305	1	0	0	1	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP90_chr16_68534291_68572131	1/1	a0001	636	363	87	70	154	12	38	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	a0002	636	2	0	0	2	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	a0003	636	1	1	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	a0004	636	1	0	0	0	0	1	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	a0005	636	1	0	0	0	0	1	copy fasta	ZFP90	chr16	68534291	68572131
ZFP91_chr11_58574063_58626550	1/0	a0001	570	238	71	40	96	10	20	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/1	a0002	570	91	12	22	46	3	7	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	a0003	570	2	0	0	2	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	a0004	570	2	0	0	0	1	1	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	a0005	570	2	2	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	a0006	570	1	1	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP92_chrX_153406472_153431481	0/0	a0000	0	6	0	1	4	0	1	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	1/1	a0001	416	318	79	57	138	11	31	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	a0002	416	2	2	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	a0003	416	1	0	0	1	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	a0004	344	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	a0005	346	1	0	0	1	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFPL1_chr11_65079222_65093398	1/1	a0001	310	352	85	74	134	18	39	copy fasta	ZFPL1	chr11	65079222	65093398
ZFPL1_chr11_65079222_65093398	0/0	a0002	310	20	9	2	8	0	1	copy fasta	ZFPL1	chr11	65079222	65093398
ZFPL1_chr11_65079222_65093398	0/0	a0003	310	2	2	0	0	0	0	copy fasta	ZFPL1	chr11	65079222	65093398
ZFPL1_chr11_65079222_65093398	0/0	a0004	310	1	1	0	0	0	0	copy fasta	ZFPL1	chr11	65079222	65093398
ZFPL1_chr11_65079222_65093398	0/0	a0005	310	1	1	0	0	0	0	copy fasta	ZFPL1	chr11	65079222	65093398
ZFPM1_chr16_88448280_88542031	0/0	a0000	0	17	1	3	7	0	6	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0001	1004	112	47	29	28	2	6	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0002	1004	83	13	19	23	12	16	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0003	1004	19	0	7	12	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/1	a0004	1004	18	0	2	14	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0005	1003	9	9	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0006	1004	8	2	2	3	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0007	979	5	1	0	2	0	2	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0008	1004	3	3	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0009	1006	3	3	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0010	668	3	0	1	0	0	2	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0011	668	3	0	0	2	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0012	1004	2	0	0	2	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0013	1004	2	0	0	2	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0014	668	2	0	0	1	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	1/0	a0015	1006	2	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0016	1003	1	1	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031