JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZFYVE9_chr1_52137089_52351634	0/0	a0016	1425	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0017	1425	1	0	0	1	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0018	1425	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0019	1425	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFY_chrY_2930381_2987506	1/1	a0001	801	130	18	20	70	4	16	copy fasta	ZFY	chrY	2930381	2987506
ZFY_chrY_2930381_2987506	0/0	a0002	260	1	0	0	1	0	0	copy fasta	ZFY	chrY	2930381	2987506
ZG16B_chr16_2825303_2837276	0/0	a0001	172	412	79	78	198	15	42	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	a0002	172	6	6	0	0	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	a0003	172	5	1	3	0	1	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	a0004	171	4	3	1	0	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	a0005	172	3	3	0	0	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	a0006	172	3	3	0	0	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	a0007	172	1	1	0	0	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16_chr16_29773256_29787973	0/1	a0001	167	247	45	43	117	11	30	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	1/0	a0002	167	37	20	2	14	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	a0003	167	21	20	1	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	a0004	165	8	0	4	4	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	a0005	167	5	0	4	0	1	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	a0006	167	1	1	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	a0007	167	1	0	0	1	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZGLP1_chr19_10299803_10314815	1/1	a0001	273	394	96	79	167	15	35	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	a0002	273	36	0	4	20	1	11	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	a0003	273	5	0	0	5	0	0	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	a0004	273	1	0	1	0	0	0	copy fasta	ZGLP1	chr19	10299803	10314815
ZGPAT_chr20_63703039_63741142	0/0	a0001	511	329	80	65	137	13	34	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	1/1	a0002	511	12	0	5	2	1	2	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	a0003	511	2	2	0	0	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	a0004	511	1	1	0	0	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	a0005	511	1	1	0	0	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	a0006	511	1	0	0	1	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGRF1_chr4_112534339_112641909	1/1	a0001	2104	181	47	22	79	9	22	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0002	2104	115	22	21	53	7	12	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0003	2104	18	0	0	18	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0004	2104	14	2	4	5	0	3	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0005	2104	12	1	2	9	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0006	2104	10	0	7	0	2	1	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0007	2104	10	0	0	10	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0008	2104	5	0	0	5	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0009	2104	4	3	1	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0010	2104	4	0	0	4	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0011	2104	2	2	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0012	2104	2	2	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0013	2104	2	0	2	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0014	2104	1	0	0	1	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0015	2104	1	1	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0016	2104	1	1	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0017	2104	1	0	0	1	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0018	2104	1	1	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0019	2104	1	0	1	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0020	2104	1	1	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909