JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZKSCAN4_chr6_28236697_28257269	0/0	a0005	545	1	1	0	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	a0006	545	1	0	0	1	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	a0007	545	1	0	0	0	0	1	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN5_chr7_99499662_99539700	1/1	a0001	839	308	91	44	119	12	40	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	a0002	839	1	1	0	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	a0003	839	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	a0004	839	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	a0005	839	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN7_chr3_44550193_44577158	0/0	a0001	754	152	16	34	68	7	27	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	1/0	a0002	754	87	32	14	26	5	9	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	a0003	754	50	27	16	0	3	4	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	a0004	754	18	15	2	0	1	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	a0005	754	3	3	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	a0006	754	2	0	0	2	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	a0007	754	1	1	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	a0008	754	1	0	0	1	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	a0009	754	1	0	0	1	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/1	a0010	754	1	0	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	a0011	754	1	1	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	a0012	754	1	1	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	a0013	754	1	1	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	a0014	754	1	1	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN8_chr6_28136883_28164460	1/0	a0001	578	395	90	66	185	13	40	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/1	a0002	578	7	1	0	3	1	1	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	a0003	578	2	2	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	a0004	578	2	0	0	0	0	2	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	a0005	578	1	0	1	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	a0006	578	1	1	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	a0007	578	1	0	1	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	a0008	578	1	0	0	0	0	1	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZMAT1_chrX_101877290_101937027	1/1	a0001	695	214	57	41	83	10	21	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	a0002	695	26	13	0	11	1	1	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	a0003	696	2	1	0	1	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	a0004	85	2	0	1	0	0	1	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	a0005	696	1	0	0	1	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	a0006	89	1	0	0	1	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	a0007	158	1	0	0	1	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	a0008	695	1	0	1	0	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	a0009	695	1	0	0	1	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	a0010	695	1	0	0	0	0	1	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT2_chr5_140695447_140711686	1/1	a0001	199	379	96	62	168	15	36	copy fasta	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	a0002	199	1	0	0	0	1	0	copy fasta	ZMAT2	chr5	140695447	140711686
ZMAT3_chr3_179012223_179076809	1/1	a0001	289	349	88	74	132	12	41	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	a0002	289	1	0	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT4_chr8_40525590_40902826	1/1	a0001	229	205	68	35	64	5	31	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	a0002	229	23	8	9	0	1	5	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT5_chr22_29725956_29772007	1/1	a0001	170	390	91	78	164	15	40	copy fasta	ZMAT5	chr22	29725956	29772007
ZMAT5_chr22_29725956_29772007	0/0	a0002	3	1	0	0	0	1	0	copy fasta	ZMAT5	chr22	29725956	29772007
ZMAT5_chr22_29725956_29772007	0/0	a0003	170	1	1	0	0	0	0	copy fasta	ZMAT5	chr22	29725956	29772007
ZMIZ1_chr10_79063966_79321519	1/1	a0001	1067	283	69	61	105	12	34	copy fasta	ZMIZ1	chr10	79063966	79321519