JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF157_chrX_47365578_47419498	0/0	a0002	506	4	4	0	0	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	a0003	506	2	0	2	0	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	a0004	13	1	0	0	1	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	a0005	112	1	0	0	1	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF160_chr19_53061614_53108422	0/1	a0001	818	303	87	63	104	15	33	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	1/0	a0002	818	90	3	17	56	3	10	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	a0003	818	8	3	2	0	0	3	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	a0004	818	2	0	2	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	a0005	818	1	0	0	1	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	a0006	818	1	0	0	1	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	a0007	818	1	1	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF165_chr6_28075568_28094563	1/1	a0001	485	395	92	67	180	14	40	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	a0002	485	21	0	2	16	0	3	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	a0003	485	2	0	2	0	0	0	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	a0004	485	1	0	1	0	0	0	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	a0005	391	1	0	0	1	0	0	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	a0006	485	1	0	0	1	0	0	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	a0007	485	1	0	0	0	0	1	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	a0008	485	1	0	0	0	0	1	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	a0009	485	1	0	0	0	0	1	copy fasta	ZNF165	chr6	28075568	28094563
ZNF169_chr9_94254298_94306829	1/0	a0001	603	177	35	36	79	9	17	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	a0002	603	83	14	14	46	1	8	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/1	a0003	603	63	15	15	20	2	10	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	a0004	603	19	2	2	13	0	2	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	a0005	603	14	11	1	1	0	1	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	a0006	603	7	0	4	0	0	3	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	a0007	603	4	0	0	4	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	a0008	603	3	0	0	0	3	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	a0009	603	3	0	1	0	0	2	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	a0010	603	2	2	0	0	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	a0011	603	2	0	0	0	1	1	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	a0012	603	1	1	0	0	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	a0013	603	1	0	0	1	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	a0014	603	1	0	1	0	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	a0015	603	1	0	0	1	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	a0016	603	1	0	0	1	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF16_chr8_144925358_144955880	1/1	a0001	682	371	87	68	163	16	35	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	a0002	682	11	0	0	11	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	a0003	682	3	1	2	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	a0004	682	3	1	0	2	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	a0005	682	3	1	0	2	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	a0006	682	2	2	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	a0007	682	2	2	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	a0008	682	2	0	0	0	0	2	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	a0009	682	1	1	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	a0010	682	1	1	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	a0011	682	1	0	1	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	a0012	682	1	1	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	a0013	682	1	1	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	a0014	682	1	0	1	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880