JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF23_chr16_71442597_71467247	0/0	a0008	686	1	1	0	0	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	a0009	686	1	0	0	1	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	a0010	686	1	0	0	1	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF248_chr10_37823763_37862610	1/1	a0001	579	402	97	77	175	14	37	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	a0002	579	1	0	0	1	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	a0003	579	1	1	0	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	a0004	579	1	0	1	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	a0005	579	1	0	0	0	0	1	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	a0006	579	1	0	0	1	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	a0007	579	1	0	0	1	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF24_chr18_35327227_35349420	0/1	a0001	368	278	82	60	86	13	36	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	1/0	a0002	368	137	15	14	98	1	8	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	a0003	368	2	0	0	2	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	a0004	368	1	1	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF250_chr8_144871955_144906453	1/1	a0001	555	391	95	74	178	14	28	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	a0002	555	1	1	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF251_chr8_144715909_144760531	0/1	a0001	671	383	93	61	178	14	36	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	a0002	671	1	1	0	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	a0003	671	1	1	0	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	a0004	671	1	1	0	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	a0005	671	1	0	0	1	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	a0006	671	1	0	0	1	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	a0007	671	1	0	1	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF253_chr19_19860882_19899674	1/1	a0001	499	301	79	59	109	16	36	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	a0002	499	46	5	6	33	0	2	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	a0003	499	15	0	0	15	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	a0004	499	2	2	0	0	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	a0005	266	2	2	0	0	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	a0006	491	1	0	0	1	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	a0007	499	1	0	1	0	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	a0008	499	1	0	0	1	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	a0009	316	1	0	0	1	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF254_chr19_24082187_24134968	1/0	a0001	659	266	75	55	90	12	33	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	a0002	659	56	14	10	23	1	8	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	a0003	659	31	0	5	25	0	1	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	a0004	659	3	0	0	3	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	a0005	659	3	0	0	3	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	a0006	659	2	0	0	2	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	a0007	659	2	0	0	0	0	2	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	a0008	659	1	1	0	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	a0009	659	1	0	0	1	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	a0010	659	1	1	0	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	a0011	659	1	0	0	1	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	a0012	659	1	0	0	0	1	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	a0013	659	1	0	0	1	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	a0014	659	1	1	0	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	a0015	659	1	0	0	1	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF256_chr19_57935833_57952706	1/1	a0001	627	413	93	76	188	14	40	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	a0002	627	1	0	1	0	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	a0003	627	1	1	0	0	0	0	copy fasta	ZNF256	chr19	57935833	57952706