JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF266_chr19_9407429_9440573	0/0	a0006	157	1	0	0	0	0	1	copy fasta	ZNF266	chr19	9407429	9440573
ZNF267_chr16_31868807_31922357	0/1	a0001	743	165	35	33	80	8	8	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	1/0	a0002	743	41	35	5	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	a0003	743	5	5	0	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	a0004	743	3	3	0	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	a0005	743	1	1	0	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	a0006	743	1	1	0	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF268_chr12_133176495_133219832	1/1	a0001	947	128	32	23	53	5	13	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	a0002	947	89	31	26	20	1	11	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	a0003	947	55	2	20	23	2	8	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	a0004	947	40	1	7	15	6	11	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	a0005	947	16	16	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	a0006	947	5	5	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	a0007	947	2	2	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	a0008	947	2	0	0	1	1	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	a0009	947	1	0	0	0	0	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	a0010	947	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	a0011	947	1	1	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	a0012	947	1	1	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	a0013	709	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	a0014	947	1	0	0	0	1	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	a0015	947	1	1	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF26_chr12_132981367_133032102	1/1	a0001	533	343	92	72	113	18	46	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	a0002	533	1	0	0	1	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF273_chr7_64898273_64935981	0/1	a0001	569	191	24	39	103	8	16	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	1/0	a0002	569	156	58	27	50	6	14	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	a0003	569	38	4	5	25	2	2	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	a0004	569	29	0	5	24	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	a0005	569	2	0	0	2	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	a0006	569	2	0	0	2	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	a0007	569	1	1	0	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	a0008	569	1	1	0	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	a0009	569	1	1	0	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	a0010	569	1	1	0	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF274_chr19_58178061_58218562	1/0	a0001	653	330	84	61	139	10	35	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/1	a0002	653	37	3	16	0	6	11	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	a0003	653	20	0	0	20	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	a0004	653	3	2	0	0	1	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	a0005	653	1	0	0	0	1	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	a0006	653	1	0	0	1	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	a0007	653	1	0	0	1	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	a0008	631	1	0	1	0	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	a0009	653	1	0	0	1	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	a0010	653	1	1	0	0	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	a0011	653	1	1	0	0	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	a0012	653	1	1	0	0	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF275_chrX_153329153_153357926	1/1	a0001	429	327	78	51	153	11	32	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	a0002	144	1	0	0	1	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	a0003	96	1	0	0	1	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF276_chr16_89716537_89745925	0/1	a0001	614	206	50	31	99	2	23	copy fasta	ZNF276	chr16	89716537	89745925