JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF286A_chr17_15694752_15725787	0/0	a0001	521	216	48	30	109	8	21	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	1/1	a0002	521	205	32	51	87	10	23	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	a0003	521	12	12	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	a0004	521	3	0	0	3	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	a0005	521	2	2	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	a0006	521	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	a0007	521	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	a0008	521	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	a0009	521	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	a0010	521	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	a0011	521	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF287_chr17_16541954_16574204	1/1	a0001	761	218	52	46	80	13	25	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	a0002	761	43	38	4	0	1	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	a0003	761	1	0	0	0	0	1	copy fasta	ZNF287	chr17	16541954	16574204
ZNF28_chr19_52792408_52826633	0/1	a0001	718	112	31	31	29	7	13	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0002	718	96	0	5	81	2	8	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0003	718	61	25	8	17	5	6	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0004	718	61	17	11	19	0	14	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	1/0	a0005	718	42	2	16	15	2	6	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0006	217	11	0	0	10	0	1	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0007	718	10	7	3	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0008	718	9	0	0	9	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0009	718	8	8	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0010	718	2	0	0	0	2	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0011	718	2	2	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0012	18	1	0	0	1	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0013	718	1	0	0	0	0	1	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0014	718	1	0	0	1	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0015	718	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0016	718	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0017	718	1	0	0	1	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0018	718	1	0	0	0	0	1	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	a0019	217	1	0	0	1	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF292_chr6_87150565_87270943	1/0	a0001	2723	124	29	23	48	5	18	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0002	2723	124	33	21	50	7	13	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0003	2723	58	10	15	22	3	8	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/1	a0004	2723	33	4	5	20	1	2	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0005	2723	4	0	0	4	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0006	2723	3	3	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0007	2723	2	1	1	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0008	2723	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0009	2723	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0010	2723	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0011	2723	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0012	2723	1	0	1	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0013	2723	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0014	2723	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0015	2723	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0016	2723	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0017	2723	1	0	0	0	0	1	copy fasta	ZNF292	chr6	87150565	87270943