JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF292_chr6_87150565_87270943	0/0	a0018	2723	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0019	2723	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0020	2723	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	a0021	2723	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF296_chr19_45066500_45081478	1/1	a0001	475	402	92	83	169	14	42	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	a0002	475	3	2	1	0	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	a0003	475	2	2	0	0	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	a0004	475	2	0	0	2	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	a0005	475	1	0	0	1	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	a0006	475	1	0	0	1	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	a0007	475	1	0	0	1	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF2_chr2_95160809_95189317	1/1	a0001	425	362	81	70	163	6	40	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	a0002	425	2	0	0	2	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	a0003	425	1	1	0	0	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	a0004	425	1	0	0	1	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF300_chr5_150889399_150909980	1/1	a0001	604	388	82	68	181	16	39	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	a0002	603	17	8	1	7	0	1	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	a0003	604	4	0	2	2	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	a0004	604	2	2	0	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	a0005	604	1	0	0	0	0	1	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	a0006	604	1	0	0	0	0	1	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	a0007	604	1	0	1	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF302_chr19_34672678_34691396	1/0	a0001	399	288	74	47	134	10	22	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	a0002	399	114	12	13	76	5	8	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	a0003	399	29	4	6	10	1	8	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/1	a0004	399	4	0	1	0	0	2	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	a0005	399	2	2	0	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	a0006	399	1	0	1	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	a0007	399	1	1	0	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	a0008	399	1	0	0	1	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	a0009	399	1	0	0	1	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	a0010	399	1	1	0	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF304_chr19_57346271_57364898	0/1	a0001	659	365	86	67	155	16	40	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	a0002	659	58	4	3	48	0	3	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	1/0	a0003	659	9	0	0	8	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	a0004	659	3	0	2	0	0	1	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	a0005	659	2	2	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	a0006	659	2	2	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	a0007	659	1	0	0	1	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	a0008	659	1	0	0	1	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	a0009	659	1	0	0	1	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF30_chr19_34921903_34950168	1/1	a0001	623	129	7	36	63	5	16	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0002	623	93	10	10	64	4	5	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0003	623	63	18	11	28	2	4	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0004	623	41	25	2	6	0	8	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0005	623	22	2	9	5	1	5	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0006	623	19	19	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0007	623	12	1	5	5	0	1	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0008	623	6	0	4	1	0	1	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0009	623	5	5	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168