JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF30_chr19_34921903_34950168	0/0	a0010	623	4	3	1	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0011	623	4	2	0	2	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0012	623	2	2	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0013	623	2	0	0	2	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0014	623	1	1	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0015	591	1	0	0	1	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0016	623	1	1	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0017	623	1	0	0	0	1	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0018	623	1	0	0	1	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0019	623	1	0	0	0	0	1	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0020	541	1	0	0	1	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0021	623	1	0	0	0	1	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0022	623	1	0	0	0	0	1	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	a0023	623	1	0	0	1	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF311_chr6_28989788_29010315	0/1	a0001	666	273	77	42	121	9	23	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	a0002	666	130	2	32	71	9	16	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	a0003	666	9	9	0	0	0	0	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	a0004	666	2	2	0	0	0	0	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	a0005	666	1	0	1	0	0	0	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	a0006	666	1	0	1	0	0	0	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	a0007	666	1	0	0	0	0	1	copy fasta	ZNF311	chr6	28989788	29010315
ZNF316_chr7_6632318_6663279	0/0	a0001	1004	144	13	18	87	2	24	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0002	1004	91	26	9	52	0	4	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/1	a0003	1004	49	19	14	2	6	7	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	1/0	a0004	1004	41	3	21	8	4	4	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0005	1004	31	25	5	0	0	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0006	1004	27	0	1	24	0	2	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0007	1004	6	1	2	0	3	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0008	1004	6	1	1	0	2	2	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0009	890	4	1	1	1	0	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0010	1004	3	2	1	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0011	890	2	0	0	2	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0012	890	2	0	0	2	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0013	890	2	0	1	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0014	1004	2	2	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0015	1020	1	0	0	0	0	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0016	890	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0017	890	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0018	1004	1	1	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0019	890	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0020	890	1	1	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0021	1004	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0022	796	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0023	1004	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0024	1004	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0025	1004	1	1	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	a0026	1004	1	0	0	0	1	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF317_chr19_9135397_9168413	1/0	a0001	595	322	85	57	131	15	33	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	a0002	595	66	7	18	33	1	7	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/1	a0003	595	3	0	0	0	0	2	copy fasta	ZNF317	chr19	9135397	9168413