JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF324_chr19_58462080_58480436	0/0	a0007	553	1	1	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	a0008	553	1	0	0	1	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	a0009	247	1	0	0	1	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	a0010	553	1	0	0	1	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF326_chr1_89990110_90040533	1/1	a0001	582	230	81	49	54	13	31	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	a0002	582	1	0	0	0	1	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	a0003	582	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	a0004	582	1	0	1	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	a0005	582	1	0	0	0	0	1	copy fasta	ZNF326	chr1	89990110	90040533
ZNF329_chr19_58121248_58155789	1/1	a0001	541	412	90	68	186	18	48	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	a0002	541	6	5	1	0	0	0	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	a0003	541	1	0	0	0	0	1	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	a0004	541	1	0	0	0	0	1	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	a0005	541	1	1	0	0	0	0	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	a0006	541	1	0	1	0	0	0	copy fasta	ZNF329	chr19	58121248	58155789
ZNF32_chr10_43638862_43653881	1/1	a0001	273	437	92	72	212	18	41	copy fasta	ZNF32	chr10	43638862	43653881
ZNF32_chr10_43638862_43653881	0/0	a0002	273	1	0	0	0	0	1	copy fasta	ZNF32	chr10	43638862	43653881
ZNF330_chr4_141215895_141239697	1/1	a0001	320	338	80	60	146	16	34	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	a0002	320	10	9	1	0	0	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	a0003	320	1	1	0	0	0	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	a0004	320	1	0	1	0	0	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF331_chr19_53533145_53585269	1/1	a0001	463	392	96	68	175	15	36	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	a0002	463	22	0	2	12	1	7	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	a0003	463	1	0	0	0	0	1	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	a0004	463	1	0	0	1	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF333_chr19_14685048_14726899	1/1	a0001	665	180	54	35	64	9	16	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	a0002	665	150	24	29	75	4	18	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	a0003	665	26	2	0	21	0	3	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	a0004	665	10	2	4	0	1	3	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	a0005	665	7	7	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	a0006	665	2	2	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	a0007	665	2	0	0	2	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	a0008	665	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	a0009	665	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	a0010	665	1	0	0	1	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	a0011	665	1	0	0	1	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	a0012	665	1	0	0	0	1	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	a0013	665	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	a0014	665	1	0	0	1	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	a0015	665	1	0	0	0	1	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	a0016	665	1	0	0	1	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF334_chr20_46494630_46518559	1/1	a0001	680	373	87	56	178	10	40	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	a0002	680	5	0	3	2	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	a0003	680	3	3	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	a0004	680	2	1	1	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	a0005	680	2	2	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	a0006	680	1	0	0	0	0	1	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	a0007	680	1	1	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	a0008	680	1	1	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	a0009	680	1	0	1	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559