JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF462_chr9_106858166_107018634	0/0	a0015	2501	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	a0016	2506	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	a0017	2506	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	a0018	2506	1	0	1	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF467_chr7_149759182_149778588	1/0	a0001	595	319	67	66	127	15	43	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	a0002	595	31	11	4	12	2	2	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/1	a0003	595	23	14	6	0	1	1	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	a0004	595	7	0	0	7	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	a0005	595	7	0	0	7	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	a0006	599	3	0	2	1	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	a0007	595	2	2	0	0	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	a0008	595	1	0	0	1	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	a0009	595	1	0	0	1	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF468_chr19_52833010_52862619	1/1	a0001	522	181	15	30	109	9	16	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0002	522	99	20	15	48	4	12	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0003	522	67	27	8	13	3	16	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0004	522	43	12	12	13	2	4	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0005	522	9	8	1	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0006	522	6	6	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0007	522	5	0	5	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0008	522	4	4	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0009	494	2	0	2	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0010	522	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0011	522	1	0	0	1	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0012	522	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0013	522	1	0	0	1	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0014	522	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0015	410	1	0	1	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0016	522	1	0	0	1	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0017	522	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0018	522	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	a0019	522	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF469_chr16_88377959_88445753	0/0	a0001	3953	77	5	23	34	2	13	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0002	3953	34	3	7	20	1	3	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0003	3953	10	0	1	7	1	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0004	836	10	3	1	4	0	2	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0005	3953	9	0	4	0	0	5	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0006	3953	8	0	3	3	1	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0007	3953	8	1	1	4	1	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/1	a0008	3953	7	1	0	1	3	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0009	3953	5	4	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0010	3953	5	5	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0011	3953	5	4	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0012	3953	4	4	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0013	3953	4	0	0	2	0	2	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0014	3953	4	0	0	4	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0015	3953	4	2	2	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0016	3953	4	4	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0017	3953	4	3	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0018	3953	4	0	4	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753