JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF526_chr19_42215312_42233201	1/1	a0001	670	295	71	64	114	13	31	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	a0002	670	36	0	8	17	2	9	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	a0003	669	6	6	0	0	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	a0004	150	1	0	0	1	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	a0005	670	1	0	0	1	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	a0006	670	1	1	0	0	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	a0007	670	1	0	0	0	1	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	a0008	670	1	0	0	1	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF527_chr19_37366099_37398066	1/1	a0001	609	236	44	49	105	11	25	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	a0002	609	135	37	17	67	2	12	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	a0003	610	20	1	6	11	1	1	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	a0004	609	3	3	0	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	a0005	609	1	0	0	1	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	a0006	609	1	0	0	1	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	a0007	609	1	1	0	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	a0008	609	1	0	0	1	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF528_chr19_52392849_52423401	1/1	a0001	628	454	94	75	221	15	47	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	a0002	628	7	1	4	2	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	a0003	628	3	0	0	3	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	a0004	628	3	3	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	a0005	628	2	2	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	a0006	628	1	0	0	0	0	1	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	a0007	427	1	0	0	0	0	1	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	a0008	628	1	0	0	1	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	a0009	628	1	0	1	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	a0010	628	1	0	0	1	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	a0011	628	1	0	0	0	1	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	a0012	628	1	0	0	0	0	1	copy fasta	ZNF528	chr19	52392849	52423401
ZNF529_chr19_36538613_36578292	0/0	a0001	563	213	67	45	66	10	25	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	1/1	a0002	563	148	19	31	77	6	13	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	a0003	563	3	3	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	a0004	563	2	0	0	2	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	a0005	563	1	0	0	1	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	a0006	563	1	1	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF530_chr19_57594885_57615098	0/0	a0001	566	169	34	34	66	10	25	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	1/1	a0002	566	124	11	22	74	1	14	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	a0003	566	88	32	8	38	4	6	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	a0004	566	41	4	2	30	1	4	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	a0005	566	5	5	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	a0006	566	4	4	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	a0007	566	4	4	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	a0008	566	3	0	3	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	a0009	566	2	2	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	a0010	566	2	0	1	0	0	1	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	a0011	566	1	0	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	a0012	566	1	1	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	a0013	566	1	0	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	a0014	566	1	0	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	a0015	566	1	0	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	a0016	566	1	1	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098