JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF532_chr18_58859877_58991480	1/1	a0001	1301	292	88	58	107	13	24	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	a0002	1301	59	1	14	37	1	6	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	a0003	1301	1	0	0	1	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	a0004	1301	1	0	0	1	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	a0005	1301	1	1	0	0	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF534_chr19_52424148_52447499	0/1	a0001	661	308	43	63	143	14	44	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	1/0	a0002	661	82	0	9	66	2	4	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0003	661	26	23	3	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0004	661	9	8	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0005	661	8	8	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0006	661	5	1	4	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0007	661	5	4	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0008	661	4	4	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0009	661	3	0	0	3	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0010	661	3	3	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0011	661	2	2	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0012	661	2	0	0	0	2	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0013	661	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0014	661	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0015	661	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0016	661	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0017	661	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0018	661	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0019	661	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0020	661	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0021	437	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0022	661	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	a0023	661	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF536_chr19_30367384_30563059	1/1	a0001	1300	188	68	37	56	2	23	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	a0002	1300	6	3	0	0	0	3	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	a0003	1300	5	5	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	a0004	1300	4	1	2	1	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	a0005	1300	3	0	0	3	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	a0006	1300	3	3	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	a0007	1300	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	a0008	1300	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	a0009	1300	1	0	1	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF540_chr19_37589876_37619179	1/1	a0001	660	231	66	59	72	11	21	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	a0002	660	111	28	10	63	1	9	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	a0003	660	1	0	1	0	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	a0004	653	1	0	0	1	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	a0005	660	1	0	0	1	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	a0006	660	1	0	0	1	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF541_chr19_47515690_47578148	1/0	a0001	1346	184	55	39	57	10	22	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0002	1346	59	9	13	30	2	5	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0003	1346	19	1	5	11	0	2	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0004	1346	7	0	0	7	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0005	1346	6	6	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0006	1346	5	5	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0007	1346	5	3	2	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148