Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF559_chr19_9319179_9350871	1/1	a0001	538	328	76	64	144	11	31	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	a0002	538	27	4	6	10	3	4	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	a0003	538	14	10	1	2	0	1	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	a0004	509	5	0	0	5	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	a0005	538	4	4	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	a0006	538	3	3	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	a0007	538	3	0	0	3	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	a0008	538	3	0	0	3	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	a0009	34	1	0	0	1	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	a0010	538	1	1	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	a0011	538	1	0	1	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	a0012	538	1	0	0	0	0	1	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	a0013	538	1	0	0	0	0	1	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	a0014	538	1	1	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	a0015	538	1	1	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF560_chr19_9461355_9503616	1/1	a0001	790	387	81	72	175	16	41	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	a0002	790	13	13	0	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	a0003	790	2	2	0	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	a0004	790	2	0	2	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	a0005	790	1	1	0	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	a0006	790	1	0	1	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	a0007	790	1	0	1	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	a0008	790	1	0	0	0	0	1	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	a0009	790	1	1	0	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	a0010	790	1	0	0	1	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF561_chr19_9602329_9626232	1/1	a0001	486	373	96	65	151	14	45	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	a0002	486	6	0	1	5	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	a0003	486	2	0	0	2	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	a0004	486	1	1	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	a0005	486	1	1	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	a0006	486	1	0	1	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	a0007	486	1	0	0	0	0	1	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	a0008	486	1	0	1	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF562_chr19_9636807_9680100	1/1	a0001	426	288	96	62	86	10	32	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	a0002	426	1	0	0	1	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	a0003	426	1	0	0	1	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF563_chr19_12312477_12338633	1/1	a0001	476	362	87	72	152	12	37	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	a0002	476	1	0	0	0	0	1	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	a0003	352	1	0	1	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	a0004	476	1	1	0	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	a0005	476	1	0	0	1	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	a0006	476	1	0	0	1	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	a0007	476	1	0	1	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF564_chr19_12520373_12556482	1/1	a0001	553	406	96	73	179	12	44	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	a0002	553	1	0	1	0	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	a0003	553	1	1	0	0	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	a0004	553	1	0	0	1	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	a0005	553	1	1	0	0	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	a0006	553	1	0	0	1	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	a0007	3	1	0	0	1	0	0	copy fasta	ZNF564	chr19	12520373	12556482