Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF572_chr8_124968295_124984389	0/1	a0004	529	3	0	2	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	a0005	529	2	0	0	2	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	a0006	529	2	2	0	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	a0007	529	1	0	0	1	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	a0008	529	1	0	0	1	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	a0009	529	1	1	0	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF573_chr19_37733302_37784586	0/1	a0001	665	216	81	47	60	11	16	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	1/0	a0002	665	86	1	10	64	1	9	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	a0003	665	25	3	10	9	1	2	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	a0004	665	8	0	2	0	1	5	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	a0005	665	7	0	0	7	0	0	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	a0006	665	5	3	2	0	0	0	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	a0007	665	1	0	0	1	0	0	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	a0008	665	1	0	0	1	0	0	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	a0009	665	1	0	1	0	0	0	copy fasta	ZNF573	chr19	37733302	37784586
ZNF574_chr19_42071166_42086552	1/1	a0001	896	309	78	64	119	10	36	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	a0002	896	13	13	0	0	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	a0003	896	6	0	0	6	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	a0004	896	4	0	0	4	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	a0005	896	1	0	1	0	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	a0006	896	1	0	1	0	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	a0007	896	1	0	0	1	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	a0008	606	1	0	0	1	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	a0009	896	1	0	0	0	0	1	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	a0010	896	1	0	0	1	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	a0011	896	1	0	0	0	0	1	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	a0012	896	1	1	0	0	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF575_chr19_43528188_43541087	1/1	a0001	245	423	88	78	193	16	46	copy fasta	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	a0002	245	1	0	0	1	0	0	copy fasta	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	a0003	245	1	0	0	1	0	0	copy fasta	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	a0004	245	1	0	0	1	0	0	copy fasta	ZNF575	chr19	43528188	43541087
ZNF576_chr19_43591595_43606157	1/1	a0001	170	411	84	78	180	18	49	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	a0002	170	6	6	0	0	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	a0003	170	4	0	0	4	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	a0004	170	1	0	0	0	0	1	copy fasta	ZNF576	chr19	43591595	43606157
ZNF577_chr19_51862048_51892951	0/0	a0000	0	2	2	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	1/1	a0001	485	193	31	34	100	10	16	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0002	485	112	14	22	52	6	18	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0003	485	26	7	9	3	0	7	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0004	485	8	5	3	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0005	485	7	7	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0006	485	7	7	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0007	485	6	6	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0008	485	3	3	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0009	485	3	3	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0010	485	3	2	1	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0011	64	2	0	0	2	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0012	485	2	2	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0013	485	1	0	0	1	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0014	485	1	0	0	0	0	1	copy fasta	ZNF577	chr19	51862048	51892951