Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF579_chr19_55571774_55585848	0/0	a0026	564	1	0	0	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0027	563	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0028	507	1	0	0	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0029	507	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0030	491	1	0	1	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0031	507	1	0	0	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0032	571	1	0	0	0	0	1	copy fasta	ZNF579	chr19	55571774	55585848
ZNF57_chr19_2895928_2923473	1/1	a0001	555	175	60	37	54	6	16	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	a0002	555	155	20	29	84	9	13	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	a0003	555	37	0	4	22	0	11	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	a0004	555	9	9	0	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	a0005	555	6	0	1	0	1	4	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	a0006	555	3	1	1	0	0	1	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	a0007	555	3	3	0	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	a0008	555	2	0	0	2	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	a0009	555	1	1	0	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	a0010	555	1	0	0	0	0	1	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	a0011	555	1	0	0	1	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	a0012	555	1	1	0	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	a0013	555	1	0	0	1	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	a0014	555	1	0	0	1	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	a0015	555	1	1	0	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	a0016	24	1	0	0	1	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF580_chr19_55636002_55648470	1/1	a0001	172	390	88	87	149	14	50	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	a0002	172	4	4	0	0	0	0	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	a0003	172	1	0	0	1	0	0	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	a0004	172	1	0	1	0	0	0	copy fasta	ZNF580	chr19	55636002	55648470
ZNF581_chr19_55638649_55650623	1/1	a0001	197	397	96	88	147	14	50	copy fasta	ZNF581	chr19	55638649	55650623
ZNF581_chr19_55638649_55650623	0/0	a0002	197	1	0	0	1	0	0	copy fasta	ZNF581	chr19	55638649	55650623
ZNF582_chr19_56377751_56398534	1/1	a0001	517	468	88	83	229	16	50	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	a0002	517	10	10	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	a0003	517	3	0	0	3	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	a0004	517	2	2	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	a0005	517	1	0	1	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF583_chr19_56399332_56432364	1/1	a0001	569	328	86	60	122	16	42	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	a0002	569	4	4	0	0	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF584_chr19_58403649_58423327	1/0	a0001	421	256	37	51	130	10	27	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/1	a0002	421	117	46	15	43	5	7	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	a0003	421	46	11	15	9	2	9	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	a0004	421	2	0	2	0	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	a0005	421	1	0	0	1	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	a0006	421	1	0	0	0	0	1	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	a0007	421	1	0	1	0	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	a0008	421	1	0	0	0	1	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	a0009	421	1	0	0	1	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF585A_chr19_37140540_37177695	1/0	a0001	769	155	14	29	85	8	18	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/1	a0002	769	115	37	27	22	9	19	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	a0003	769	50	21	10	18	0	1	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	a0004	769	14	14	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	a0005	769	5	3	2	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695