Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF600_chr19_52759184_52791791	0/0	a0005	791	10	6	0	4	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0006	791	8	7	1	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0007	791	7	0	0	6	0	1	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0008	791	6	5	1	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0009	791	3	3	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0010	791	3	0	0	3	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0011	791	3	3	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0012	791	2	2	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0013	219	2	0	0	0	2	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0014	791	2	0	0	2	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0015	791	2	2	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0016	791	2	2	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0017	791	2	1	1	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0018	791	2	0	2	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0019	791	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0020	791	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0021	791	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0022	791	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0023	791	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0024	791	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF605_chr12_132913306_132961306	1/1	a0001	641	123	37	29	37	8	10	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	a0002	641	1	0	1	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	a0003	641	1	1	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	a0004	641	1	0	0	1	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF606_chr19_57972076_58007820	1/1	a0001	792	334	61	63	168	11	29	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	a0002	792	49	20	7	15	3	4	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	a0003	792	3	3	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	a0004	792	1	0	0	0	0	1	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	a0005	792	1	0	0	1	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	a0006	792	1	0	1	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	a0007	792	1	0	1	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF607_chr19_37691371_37724761	0/1	a0001	696	124	41	41	25	7	9	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	a0002	696	121	27	16	64	1	13	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	a0003	696	62	4	12	24	8	14	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	a0004	696	22	0	5	16	0	1	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	a0005	696	9	9	0	0	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	a0006	696	8	8	0	0	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	1/0	a0007	696	5	0	0	3	0	1	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	a0008	696	2	0	0	0	0	2	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	a0009	696	2	0	0	2	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	a0010	592	1	0	0	1	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	a0011	479	1	1	0	0	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	a0012	696	1	0	0	1	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF608_chr5_124631915_124751639	0/0	a0001	1512	193	54	33	80	3	23	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	1/1	a0002	1512	113	30	33	29	7	12	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	a0003	1512	1	0	0	0	0	1	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	a0004	1512	1	0	0	1	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	a0005	1512	1	0	0	1	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	a0006	1512	1	0	0	1	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF609_chr15_64455578_64691068	1/1	a0001	1411	175	91	22	22	8	30	copy fasta	ZNF609	chr15	64455578	64691068