Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF609_chr15_64455578_64691068	0/0	a0002	1411	1	1	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF610_chr19_52331243_52372778	0/1	a0001	462	313	68	66	125	13	40	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	1/0	a0002	462	83	19	11	47	1	4	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	a0003	462	10	0	0	10	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	a0004	462	8	3	0	4	0	1	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	a0005	462	5	4	1	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	a0006	462	1	1	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	a0007	462	1	1	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	a0008	462	1	0	0	1	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	a0009	462	1	0	0	0	1	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	a0010	462	1	0	0	0	1	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	a0011	462	1	0	0	0	0	1	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	a0012	462	1	1	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	a0013	462	1	0	0	1	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	a0014	462	1	1	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF611_chr19_52697813_52740044	1/1	a0001	705	210	20	38	107	9	34	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0002	705	173	54	28	73	7	11	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0003	705	5	5	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0004	705	3	3	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0005	705	3	3	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0006	705	2	2	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0007	705	2	0	0	2	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0008	25	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0009	705	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0010	705	1	1	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0011	705	1	0	1	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0012	705	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0013	705	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0014	705	1	0	0	0	0	1	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0015	705	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0016	705	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	a0017	705	1	0	1	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF613_chr19_51922472_51951621	1/1	a0001	617	366	82	59	167	16	40	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	a0002	617	10	9	1	0	0	0	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	a0003	617	4	0	3	1	0	0	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	a0004	617	1	1	0	0	0	0	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	a0005	617	1	0	1	0	0	0	copy fasta	ZNF613	chr19	51922472	51951621
ZNF614_chr19_52008324_52033379	1/1	a0001	585	179	23	37	91	10	16	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	a0002	585	87	14	9	46	6	12	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	a0003	585	64	21	11	21	0	11	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	a0004	585	40	0	6	34	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	a0005	585	28	23	5	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	a0006	585	12	10	1	0	0	1	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	a0007	585	3	0	3	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	a0008	585	1	1	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	a0009	585	1	1	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	a0010	24	1	1	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF615_chr19_51986332_52013211	0/0	a0001	742	200	32	40	98	11	19	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	a0002	742	175	48	27	67	7	26	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	a0003	742	7	7	0	0	0	0	copy fasta	ZNF615	chr19	51986332	52013211